PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW18255.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 428aa MW: 46719.4 Da PI: 7.857

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW18255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	50	75	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++rtG C+yG++Ck++H+ RWW18255.1 50 PGEPNCSFYLRTGLCRYGSKCKYNHP 75 5789*********************8 PP
2	zf-CCCH	37.3	4.7e-12	93	118	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tGtCk+G++Ck+ H++ RWW18255.1 93 GQPDCQFFLKTGTCKFGATCKYYHPQ 118 6899********************97 PP
3	zf-CCCH	37.5	3.9e-12	139	163	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tG+Ck+G CkF+H++ RWW18255.1 139 EKSCPHYMKTGYCKFGVACKFNHPQ 163 567********************97 PP
4	zf-CCCH	38.9	1.4e-12	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG++Ck++H++ RWW18255.1 278 DQPECQYYMKTGGCKYGSSCKYHHPK 303 689*********************96 PP
5	zf-CCCH	35	2.3e-11	322	347	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f+a++G CkyG++CkF H+ RWW18255.1 322 PGEPACTFYAAYGSCKYGASCKFDHP 347 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MPGARHNALF DSSSNASPGK LEETMSRLNI DDEDGREGAD GQPNPYPDRP GEPNCSFYLR 60 TGLCRYGSKC KYNHPNITAK ETQCRDEPHP RDGQPDCQFF LKTGTCKFGA TCKYYHPQDK 120 HDAQLFLLND LGLPIRKGEK SCPHYMKTGY CKFGVACKFN HPQPVSVGTM FPISGSLVYG 180 YTGSSAPIRG PSLIGLPLWP SLRTPYMTNL SIQGFPSYMP LVFPSAQATA PVQQGWTKYM 240 GSASIPSNKS LGSDHIPNSK HRADPGSSMT VIFPERPDQP ECQYYMKTGG CKYGSSCKYH 300 HPKERNQVAA CTIGPFGLPL RPGEPACTFY AAYGSCKYGA SCKFDHPYVV VFPLPDSSLI 360 TPHQRVSKST WMAADSSSGS LPTASDEFKS VSIGEMQGVD NNDIGSPCTQ TSPSHTTPHS 420 ESSINQSD

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MPGARHNALF DSSSNASPGK LEETMSRLNI DDEDGREGAD GQPNPYPDRP GEPNCSFYLR  60
TGLCRYGSKC KYNHPNITAK ETQCRDEPHP RDGQPDCQFF LKTGTCKFGA TCKYYHPQDK  120
HDAQLFLLND LGLPIRKGEK SCPHYMKTGY CKFGVACKFN HPQPVSVGTM FPISGSLVYG  180
YTGSSAPIRG PSLIGLPLWP SLRTPYMTNL SIQGFPSYMP LVFPSAQATA PVQQGWTKYM  240
GSASIPSNKS LGSDHIPNSK HRADPGSSMT VIFPERPDQP ECQYYMKTGG CKYGSSCKYH  300
HPKERNQVAA CTIGPFGLPL RPGEPACTFY AAYGSCKYGA SCKFDHPYVV VFPLPDSSLI  360
TPHQRVSKST WMAADSSSGS LPTASDEFKS VSIGEMQGVD NNDIGSPCTQ TSPSHTTPHS  420
ESSINQSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-88	C3H family protein