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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWW18018.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 276aa MW: 31765.6 Da PI: 5.305 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 56.7 | 4.2e-18 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t++q++ Le+ Fe ++++ e++ ++Ak lgL+ rq+ +WFqNrRa++k
RWW18018.1 83 KKRRLTADQVQFLEKSFEFENKLEPERKLRIAKFLGLKPRQIAIWFQNRRARWK 136
56789************************************************9 PP
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| 2 | HD-ZIP_I/II | 123.9 | 7.5e-40 | 82 | 174 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+++qv++LE+sFe e+kLeperK ++a+ Lgl+prq+a+WFqnrRAR+ktkqlEkdyeaLk++y +lk ++ rL ke+eeL++el++
RWW18018.1 82 EKKRRLTADQVQFLEKSFEFENKLEPERKLRIAKFLGLKPRQIAIWFQNRRARWKTKQLEKDYEALKSSYHTLKMDHGRLLKEKEELETELRN 174
69**************************************************************************************99975 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 276 aa Download sequence |
MAGRWRDGSS STAVLPQREA TYKEYAGQLF APETPTGGSL GSWCLATLKD GYGSSPDRPL 60 FRPIELEEIY DDESDELLHQ PEKKRRLTAD QVQFLEKSFE FENKLEPERK LRIAKFLGLK 120 PRQIAIWFQN RRARWKTKQL EKDYEALKSS YHTLKMDHGR LLKEKEELET ELRNSNSNLA 180 IGVKKVHRQT MPCKQEDISS ANSTMLDSES DHCIDEGRYS MLMELTSPSN AFEHVRSDQS 240 QIGEVDEVKA CSLSSLQDNS CGSEFHVTEQ DLWLWP |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 131 | 139 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 3e-34 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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