PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW12794.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 714aa MW: 76527.7 Da PI: 6.5427

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW12794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.5e-07	297	317	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C +aHg RWW12794.1 297 PCPDYRK-GACRRGDMCDYAHG 317 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MCGGPERVGP SSPSPASRED NVVMDYLTGD SFSSLLELAA SNDAGGFRRS LDRDPSAVDE 60 VCLWYGREKG SNRMVLERRT PLMVAATYGS LDVLGLLLSS PSVLVNRASG RDRATALHCA 120 ASGGSPDAAD AVKLLLSAGA DPDLVDANGR RPADVVVVPP KLPDVRIALE ELLGKRCDGT 180 GGDHRRAALH VMTRPSNSDS QPLSSSSLDS DGSLSITTKA SELQPPAVPE KKEYPVDPSL 240 PDIKNSIYAT DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD 300 YRKGACRRGD MCDYAHGVFE CWLHPAQYRT RPCKDGTSCS RRVCFFAHTN EELRPLHTSP 360 GSALPSPLSS ASAAMEMAAA LSLMPGSPSS VSSVMPPFTP PMSPSANGIG HSSFSWAHSN 420 MPAVHLPGSN LQSSRLRASL SARDMPECDG HQLLNERCHS RLSSSSLGSP MARAKGFTLD 480 DIFSAEPTSS PKYNSDQGAI FSPSQKTAAL NQFQRQQQSL LSPINTVFSP KSMDGQQLAG 540 HSLLLQASLG ASSPVRMSPR NMESVSPPVS SHLSLLAQRE RQKLMLRSLS SCEAGSGTSP 600 VVGSPVNHPW LKWASPTASS LDWEVNGEEL GSLRQPSSSS ELQANGEEPD LSWVHSLVRD 660 SPPVAASGAP AGHSSPLHAN GIEGLNQDGQ SDDLDQAALL GSWLDQLQLD QMVI

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MCGGPERVGP SSPSPASRED NVVMDYLTGD SFSSLLELAA SNDAGGFRRS LDRDPSAVDE  60
VCLWYGREKG SNRMVLERRT PLMVAATYGS LDVLGLLLSS PSVLVNRASG RDRATALHCA  120
ASGGSPDAAD AVKLLLSAGA DPDLVDANGR RPADVVVVPP KLPDVRIALE ELLGKRCDGT  180
GGDHRRAALH VMTRPSNSDS QPLSSSSLDS DGSLSITTKA SELQPPAVPE KKEYPVDPSL  240
PDIKNSIYAT DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD  300
YRKGACRRGD MCDYAHGVFE CWLHPAQYRT RPCKDGTSCS RRVCFFAHTN EELRPLHTSP  360
GSALPSPLSS ASAAMEMAAA LSLMPGSPSS VSSVMPPFTP PMSPSANGIG HSSFSWAHSN  420
MPAVHLPGSN LQSSRLRASL SARDMPECDG HQLLNERCHS RLSSSSLGSP MARAKGFTLD  480
DIFSAEPTSS PKYNSDQGAI FSPSQKTAAL NQFQRQQQSL LSPINTVFSP KSMDGQQLAG  540
HSLLLQASLG ASSPVRMSPR NMESVSPPVS SHLSLLAQRE RQKLMLRSLS SCEAGSGTSP  600
VVGSPVNHPW LKWASPTASS LDWEVNGEEL GSLRQPSSSS ELQANGEEPD LSWVHSLVRD  660
SPPVAASGAP AGHSSPLHAN GIEGLNQDGQ SDDLDQAALL GSWLDQLQLD QMVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-172	C3H family protein