PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW11399.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 941aa MW: 100736 Da PI: 8.5051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW11399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8.1e-07	559	579	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G C+ Gd C +aHg RWW11399.1 559 PCLEFRK-GSCRNGDACEYAHG 579 8999*.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence
MSVGIWIFNL GWSLLGSQRP GVSRVIFQLV SGLVILHTGI FGNGRVSPML KLVENEELSS 60 FLSEEETRVK ERVRELVCPP HLLPKWAFYT CGRGACSYAW PYPCRPSGTA ELYGGHRGIC 120 LCCSGFDVRR GHATVDPYRS RNPYSEDGTH MAQIYPPINC QVVSRVTIAA AARAQSETLA 180 CFRKAKKNTE EPTQKGGSSD ACHHIIRACC VSKGPACSPP ASSPLLPQRR HHLLGTLGPS 240 WTSSSQLPRL QTKLEDAVSS PFGCGPPNED LISFRLGRRR PPSDGRPFDR KTCRKEDMCS 300 GHRKLSPPPL PPTGAVAPAS GEAKQPSSET AALLLEIAAS DDLAAFKRAV EDEGHPFDVA 360 AHWYGRSPSR GMGYQQRTPL MIAALYGSTG VMGYLLSARP AEAARRAASD GATALHCAAA 420 GGSPASLEAV KLLIGADAGV VDALDASGNR PGDVVARQSL STVAKSLGVI LKAPSFPGLS 480 SPGKEEQPKQ GEKKEYPPDS TLPDINTGIY GTDEFRMYTF KIKPCSRAYS HDWTECPFVH 540 PGENARRRDP RKFSYSCVPC LEFRKGSCRN GDACEYAHGV FESWLHPAQY RTRLCKDETG 600 CNRRVCFFAH KPEELRTVNP SAASVAGTLL SSPRSSSPAF SSLDMAMALT LMQQPGSPMS 660 PTASSGLGAA AAWMNQAGGL MTPPALQLPS SRLNASLRAR ELDFDLELLG LEGYQQKLVD 720 GITRTASPRA NRGANALVAA AAAARAPEYT DLLGSMDPSL LTQLQGLSMR KTGGAHFLSP 780 SGIQMHQPQL LSGYGGSQCS SPPVSSTSSF GLDHSMAKAI MNSRASAFAM RSQSFCDRGA 840 TAGRQSMLSA MTTATPSQLS DWGSPGGKLD WGIQGDELNK LRKSTSFALR SNHATFGGTV 900 ASGPNEPDAS WVQSLVKDGL VAGEHQNADM FSPWAEENIM A

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence

MSVGIWIFNL GWSLLGSQRP GVSRVIFQLV SGLVILHTGI FGNGRVSPML KLVENEELSS  60
FLSEEETRVK ERVRELVCPP HLLPKWAFYT CGRGACSYAW PYPCRPSGTA ELYGGHRGIC  120
LCCSGFDVRR GHATVDPYRS RNPYSEDGTH MAQIYPPINC QVVSRVTIAA AARAQSETLA  180
CFRKAKKNTE EPTQKGGSSD ACHHIIRACC VSKGPACSPP ASSPLLPQRR HHLLGTLGPS  240
WTSSSQLPRL QTKLEDAVSS PFGCGPPNED LISFRLGRRR PPSDGRPFDR KTCRKEDMCS  300
GHRKLSPPPL PPTGAVAPAS GEAKQPSSET AALLLEIAAS DDLAAFKRAV EDEGHPFDVA  360
AHWYGRSPSR GMGYQQRTPL MIAALYGSTG VMGYLLSARP AEAARRAASD GATALHCAAA  420
GGSPASLEAV KLLIGADAGV VDALDASGNR PGDVVARQSL STVAKSLGVI LKAPSFPGLS  480
SPGKEEQPKQ GEKKEYPPDS TLPDINTGIY GTDEFRMYTF KIKPCSRAYS HDWTECPFVH  540
PGENARRRDP RKFSYSCVPC LEFRKGSCRN GDACEYAHGV FESWLHPAQY RTRLCKDETG  600
CNRRVCFFAH KPEELRTVNP SAASVAGTLL SSPRSSSPAF SSLDMAMALT LMQQPGSPMS  660
PTASSGLGAA AAWMNQAGGL MTPPALQLPS SRLNASLRAR ELDFDLELLG LEGYQQKLVD  720
GITRTASPRA NRGANALVAA AAAARAPEYT DLLGSMDPSL LTQLQGLSMR KTGGAHFLSP  780
SGIQMHQPQL LSGYGGSQCS SPPVSSTSSF GLDHSMAKAI MNSRASAFAM RSQSFCDRGA  840
TAGRQSMLSA MTTATPSQLS DWGSPGGKLD WGIQGDELNK LRKSTSFALR SNHATFGGTV  900
ASGPNEPDAS WVQSLVKDGL VAGEHQNADM FSPWAEENIM A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-132	C3H family protein