PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWW11180.1
Organism
Ensete ventricosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
Family C3H
Protein Properties Length: 987aa    MW: 108562 Da    PI: 9.2351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWW11180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-07140160425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 ++Cr+fa  G+C++G++C+F H
  RWW11180.1 140 PPCRDFAS-GHCRRGSQCRFLH 160
                 79******.************* PP
2zf-CCCH18.43.9e-06234254425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 elC +f + G C++G++C++ H
  RWW11180.1 234 ELCYDFTK-GRCHRGSSCRYLH 254
                 89******.************* PP
3zf-CCCH22.71.8e-07295315425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 ++C++fa+ G C++G +CkF+H
  RWW11180.1 295 PPCKYFAE-GRCRRGQNCKFSH 315
                 79******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    
MEQYDSKKSS WDPDSESETV KYAEANRELG GPDSSFVQDY NSAVSPGPDA WRRRSRNVSP  60
RGGWRRSGSY EITCRSRSRS RSRSRSRSRG RGRSRSRSRG RGRSRSRSRS RSRSRSPVGI  120
KRGSERWSDR GRNIAGGQAP PCRDFASGHC RRGSQCRFLH EDGGRGEFDR HNTHSREPNL  180
GRGRFAWQNG KDNLSGSWDQ TDYARNKPFQ RQRSHYDDGD REKPELHRSN KPAELCYDFT  240
KGRCHRGSSC RYLHQEGSSH GGWSMKNDAR EDNYDRRDPD ASFGQKIESC KVNDPPCKYF  300
AEGRCRRGQN CKFSHQGLDG HLEGKPHDGK WDYDQITGDN SSKSASELGG QTIAIDKITP  360
TRWNSGNDGV RSAAAQFMEM GDFSHPQHQQ THGTEDDGGK KFKPEGCQKP ASQEQNITHE  420
VAGPHQRASS VSMQVMAQNA DKQQYPDDVE MLFQEGGSVI TNNIGAKPEM NSADSMLTVA  480
PVTEQSFTQS GPSQYVVPQL LHTQSFTPNV QIPQVVAPLH FSKQMQKVVY PVPPNSQSQF  540
VPLTLSDAQH LNHSMLNQPA LSLPHAVNNQ QNFGEQTQQS APSSPHNGPS QHNLNLSGPN  600
PQFLLSSVNG QNQHNLNPSG QIQQNVLPFN GQSPRNIALM GQSHQSHVPP QNGQNYQNIV  660
PPQNGQSQEN VQLLAPNKQN PVLEPPSDNS FISSDNHRTS SQKIPGEGLY SRAGSAEIKP  720
SPLSSGSVIS HKVVTSEQAA RITDLSASLA QFFGNGPLHV ATLGVPPSQP SLGSSSAVLP  780
AAAFPPSIHP SQAVSDSVGA INPDINNHPG NLRMEESETN SKSLLSVSVT DHIVEQNIDA  840
KQVEPTAGDP LKEVNVTDTG GQGRKEEKAH LGDMDADVAD GANKQTKDAK GSKMFKCALV  900
EFVKDLLKPA WKEGQLSREA HKTIVKKVVD KVTSAVQGPN IPQTQDKIDL YLAHSKPKLS  960
KLVQVSFQAL ILLSFFLLEI SVRFTCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RSRSRSRSR
27585RSRSRSRSRSR
37785RSRSRSRSR
47787RSRSRSRSRSR
57987RSRSRSRSR
67989RSRSRSRSRSR
78189RSRSRSRSR
88191RSRSRSRSRSR
98391RSRSRSRSR
108393RSRSRSRSRSR
118595RSRSRSRSRSR
128797RSRSRSRSRSR
138999RSRSRSRSRSR
149199RSRSRSRSR
1591101RSRSRSRSRSR
1693101RSRSRSRSR
1793103RSRSRSRSRSR
1895105RSRSRSRSRSR
1997107RSRSRSRSRSR
2099109RSRSRSRSRSR
21101109RSRSRSRSR
22101111RSRSRSRSRSR
23103111RSRSRSRSR
24103113RSRSRSRSRSR
25105113RSRSRSRSR
26105115RSRSRSRSRSR
27107115RSRSRSRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-10C3H family protein