PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW08356.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 637aa MW: 71031 Da PI: 9.7615

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW08356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.9e-08	328	348	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ ++ +G C+yGd+C+F H+ RWW08356.1 328 ICS-YFIGGNCSYGDKCRFLHS 348 677.9999*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MWVGGQTAGA PCLRRLVSWV REGRRCEHAG RAGVVPTPEG SRDGSRQADH DGGGSRDGGA 60 TFLGRQLLSP SLSQAGPTTA SPIVSLTSLT RRRKPKVEGG DQRAEVIRGR KAASPISSPL 120 PFPASSKGFS RYLPNEAPPS HLFFIIIAIR LPTSLDRLPG LQLSRRRPFL DRLLDIESNH 180 PFFFVSVVIF PRLRAESHHP FLDRSFDADS TFPTLAFRAE SHHRFPDRSM DINPAGQYGN 240 NRSCQRAGSS QGAAHSVNKV CFEWQAGRCN RHPCRFLHSE LPQPMSTHGA TSRRGHHQGL 300 ARGNSGAAGA PISGWGKDRE GRKASDKICS YFIGGNCSYG DKCRFLHSCE FFCKVVTGIA 360 LPSESDKLYS GSKDESVRVW DSQTGQCTGV FSVGGEVGCM ISEGAWIFIG VPNAVKIKTL 420 MDPLDKFMLW LSAMICCLLV HRCTPRWPVV TRHEQHLFCY MRMFTTAVAL DIGFMALHIT 480 CWWSCCKPTP DYVCAICFCR KIGMSKFFDL IYSAVLLTNG IFVPRVCLFY VACMMPKPNQ 540 SCYVLATTKA FISMTFRRKY TCIYILRYMY VYVYKLISDL RHHMNPVSLS RFSERGKIFS 600 KKEVRAMEVG PSGLFFTGDG TGELKVWKWS TNKMPVS

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MWVGGQTAGA PCLRRLVSWV REGRRCEHAG RAGVVPTPEG SRDGSRQADH DGGGSRDGGA  60
TFLGRQLLSP SLSQAGPTTA SPIVSLTSLT RRRKPKVEGG DQRAEVIRGR KAASPISSPL  120
PFPASSKGFS RYLPNEAPPS HLFFIIIAIR LPTSLDRLPG LQLSRRRPFL DRLLDIESNH  180
PFFFVSVVIF PRLRAESHHP FLDRSFDADS TFPTLAFRAE SHHRFPDRSM DINPAGQYGN  240
NRSCQRAGSS QGAAHSVNKV CFEWQAGRCN RHPCRFLHSE LPQPMSTHGA TSRRGHHQGL  300
ARGNSGAAGA PISGWGKDRE GRKASDKICS YFIGGNCSYG DKCRFLHSCE FFCKVVTGIA  360
LPSESDKLYS GSKDESVRVW DSQTGQCTGV FSVGGEVGCM ISEGAWIFIG VPNAVKIKTL  420
MDPLDKFMLW LSAMICCLLV HRCTPRWPVV TRHEQHLFCY MRMFTTAVAL DIGFMALHIT  480
CWWSCCKPTP DYVCAICFCR KIGMSKFFDL IYSAVLLTNG IFVPRVCLFY VACMMPKPNQ  540
SCYVLATTKA FISMTFRRKY TCIYILRYMY VYVYKLISDL RHHMNPVSLS RFSERGKIFS  600
KKEVRAMEVG PSGLFFTGDG TGELKVWKWS TNKMPVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	1e-64	C3H family protein