PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW06378.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 574aa MW: 63464.6 Da PI: 9.9415

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW06378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.4e-15	246	285	17	56
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +lF+++++p+ ++r eL+k+l L+ rqVk+WFqNrR+++k RWW06378.1 246 SLFKECPHPDDKQRMELSKRLCLEARQVKFWFQNRRTQMK 285 68***********************************998 PP
2	START	22.5	2.3e-08	476	552	1	68
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveelldd 68 ela++a++elvk+a+ eep+Wv + +n+de+++ f+ + + +ea r+++v + ++ lv +l+d RWW06378.1 476 ELALAAMDELVKMAQMEEPLWVPGLeagsDALNYDEYYRCFSGCIGgrptgFVSEATRETAVIIINSSALVDTLMDA 552 5899****************9888999********66555999999*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
GNKREXRGGS RGGKRGVREK GCPSHRGASF DAKMWTFCSY LLRERRSCAL IRSGAGVTAP 60 RREGETERSD VEKKGRSLMT FGGLLDDGSG GGVARLVADI AYGSTADSMS HPRRFVSPSL 120 HESMFASPGL SLALVTRPTL VPSRSKPTWG RTGNGTWLAS EEELEESWIR FVGARTMRTR 180 VKRAVITLKV DLETIWNRSI LARRRDTTAT PLSRSKNWKR KGSVRILISL AHFPNQNCLL 240 WYPISSLFKE CPHPDDKQRM ELSKRLCLEA RQVKFWFQNR RTQMKVFVLP QFISSLKIRF 300 LLVLSSLFDM LANRGNQTHL ERHENTILRQ ENDKLRAENL SIREAMRNPK CCNCGSPAVL 360 GEISLEEQHL RIENARLKDE LDRVCALAGK FLGKPASALA SPLALPMPPN SSLELAVGTN 420 GFAGLGSVAT STLPPFTDFT SAASSPVGTV VTPVQVVRAG ATGAVDKAQE RFVFLELALA 480 AMDELVKMAQ MEEPLWVPGL EAGSDALNYD EYYRCFSGCI GGRPTGFVSE ATRETAVIII 540 NSSALVDTLM DAVISLVYSV TGYEQRAHSL WIHI

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

GNKREXRGGS RGGKRGVREK GCPSHRGASF DAKMWTFCSY LLRERRSCAL IRSGAGVTAP  60
RREGETERSD VEKKGRSLMT FGGLLDDGSG GGVARLVADI AYGSTADSMS HPRRFVSPSL  120
HESMFASPGL SLALVTRPTL VPSRSKPTWG RTGNGTWLAS EEELEESWIR FVGARTMRTR  180
VKRAVITLKV DLETIWNRSI LARRRDTTAT PLSRSKNWKR KGSVRILISL AHFPNQNCLL  240
WYPISSLFKE CPHPDDKQRM ELSKRLCLEA RQVKFWFQNR RTQMKVFVLP QFISSLKIRF  300
LLVLSSLFDM LANRGNQTHL ERHENTILRQ ENDKLRAENL SIREAMRNPK CCNCGSPAVL  360
GEISLEEQHL RIENARLKDE LDRVCALAGK FLGKPASALA SPLALPMPPN SSLELAVGTN  420
GFAGLGSVAT STLPPFTDFT SAASSPVGTV VTPVQVVRAG ATGAVDKAQE RFVFLELALA  480
AMDELVKMAQ MEEPLWVPGL EAGSDALNYD EYYRCFSGCI GGRPTGFVSE ATRETAVIII  540
NSSALVDTLM DAVISLVYSV TGYEQRAHSL WIHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-92	HD-ZIP family protein