PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW04252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 198aa MW: 21469.4 Da PI: 8.3088 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6e-12 | 127 | 153 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C+yG+rC+++H++ RWW04252.1 127 PGEPDCSYYVRTGSCNYGERCRYNHPR 153 5789*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MVSLPSAFHR LTTLTANGVT FSAVRDPYLL PLILGQVSQL TGFCLFMTWT PGDRRISATG 60 CTRSPAAYSL QSSIKLYASP YTEQTKHPAV LRPGLITAVD CSIIRSYSCG SRPLGLGEGS 120 SPYPERPGEP DCSYYVRTGS CNYGERCRYN HPRDRGALTG VGTGRTGAVE YLERVGQPVC 180 EVPCLPFLEF GFAQLNTG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 5e-20 | C3H family protein |