PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G06410.1
Common NameF24P17.12
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 462aa    MW: 48851.6 Da    PI: 8.0452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G06410.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125681227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG C yG+rC+F+H++
  AT3G06410.1 56 DEPDCIYYLRTGVCGYGSRCRFNHPR 81
                 6899********************96 PP
2zf-CCCH37.15.2e-12103127327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++f+rtGtCk+G++Ck++H++
  AT3G06410.1 103 HPVCQHFMRTGTCKFGASCKYHHPR 127
                  789********************96 PP
3zf-CCCH37.53.9e-12150174226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++++rtG+Ck+G +C+F+H+
  AT3G06410.1 150 GEKECSYYLRTGQCKFGLTCRFNHP 174
                  7899********************9 PP
4zf-CCCH406.5e-13309333226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++f+rtG Ck+G++C+++H+
  AT3G06410.1 309 DQPECQYFMRTGDCKFGSSCRYHHP 333
                  689*********************9 PP
5zf-CCCH32.61.4e-10355380227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  + + C +fa+ G+Ck+G+ CkF H++
  AT3G06410.1 355 GVAQCTHFAQHGICKFGPACKFDHSM 380
                  6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-45481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2395482IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-56081IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6101127IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5105127IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54148176IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9150174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5150175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4154173IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854307335IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10309333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723353381IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4353380IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5356381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4359380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MERYGRPGEE GSRSDPSLEW TSHGGETAVE APMWRLGLSG GGGGGGGGES YPERPDEPDC  60
IYYLRTGVCG YGSRCRFNHP RDRGAVIGGV RGEAGALPER MGHPVCQHFM RTGTCKFGAS  120
CKYHHPRQGG GGGSVAPVSL SYLGYPLRPG EKECSYYLRT GQCKFGLTCR FNHPVPLAVQ  180
GPPQQPQQQQ PQPQPQLQTI YPTLQSQSIP SSQQYGLVLT RPSFLTGSYL QSPYGPPMVL  240
PPGMVPYSGW NPYQASLSAM PSPGTQPSIG SSSIYGLTPL SPSATAYTGT YQSVPSSNST  300
SKEFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGIVLSSIGL PLRPGVAQCT  360
HFAQHGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP YPIGSSSLSG SSAPVSSSNE  420
PTKEAVTPAV SSMVSGLSRP EPAETSGDSA SVSGSIEAKT SS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.277710.0flower| seed| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258903_at0.0
Expression AtlasAT3G06410-
AtGenExpressAT3G06410-
ATTED-IIAT3G06410-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G06410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G06410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187292.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A178VIN50.0A0A178VIN5_ARATH; Uncharacterized protein
STRINGAT3G06410.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Representative plantOGRP28651131
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  4. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]