PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW04118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 51140.4 Da PI: 8.7458 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.6e-08 | 212 | 236 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaHg RWW04118.1 212 FKTKLCCKFRA-GTCPYITNCNFAHG 236 69*********.*************8 PP | |||||||
2 | zf-CCCH | 22.3 | 2.3e-07 | 284 | 307 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+ f+ C+yGd+C+F+H+ RWW04118.1 284 GRRCKKFYTEEGCPYGDSCTFIHD 307 689********************7 PP | |||||||
3 | zf-CCCH | 42.9 | 7.9e-14 | 350 | 375 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg RWW04118.1 350 WKTRICNKWEMTGYCPFGSKCHFAHG 375 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence |
CVSVWPIYLF NGPFPEIRAY HRPDTRAPLR SILPSARSIG FLRPPPLSIP LPTVLGRRHR 60 YPVDSIGTIQ FRPLAPRNGL VDSFFRLRRW KFEILVALVW VLRVFQMDYG GGAAYPGSNA 120 IAIVPDASGP PGCDSWPPAG IDQLVWATDE DYRAWNGDPS ADAGSNSAYD GRQSQSRAGS 180 EQPPGKRARN SQGDSHGGNR TSSSRAIGKM FFKTKLCCKF RAGTCPYITN CNFAHGIEEL 240 RKPPPNWQEI VAAHEEGSEL REERQIPTVS SSIAIGDSER SHKGRRCKKF YTEEGCPYGD 300 SCTFIHDEQS KGRESVAISL SPTVGVGGGG SGGGGYGGGA NGSPQKPSNW KTRICNKWEM 360 TGYCPFGSKC HFAHGAAELH IYGGGLSENE VRDVSLATSD SKQIGTLTKA PIDTSVASSL 420 PGPLGDLYHM GVPSQRSAGV VQRQVQRSVE KWKGPDKISK IYGDWIDDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-110 | C3H family protein |