PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW04070.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 345aa MW: 37969 Da PI: 8.4499

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW04070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	7	27	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +ff++tG CkyG +Ck++H++ RWW04070.1 7 QFFLKTGSCKYGITCKYHHPR 27 59*****************96 PP
2	zf-CCCH	41	3.1e-13	47	72	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG CkyG +CkF+H++ RWW04070.1 47 DEKPCAYYMRTGSCKYGVTCKFNHPQ 72 5789********************97 PP
3	zf-CCCH	40.7	3.8e-13	187	212	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG++Ck++H++ RWW04070.1 187 DQPECQYYMKTGNCKYGSSCKYHHPK 212 689*********************96 PP
4	zf-CCCH	34.5	3.4e-11	231	256	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f+a++G C+yG CkF H+ RWW04070.1 231 PGQPVCTFYAAYGSCNYGTACKFDHP 256 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSQLFLQFFL KTGSCKYGIT CKYHHPRDKH EIHMVQLNVL GLPIRKDEKP CAYYMRTGSC 60 KYGVTCKFNH PQPASRGTSF PVMGSSVYDY SGYMAPTSGP HVIGGISQWN LSRIPYMSNP 120 TTQDLPAYVP LVLPPSQGTI PVPQGWISYM GNTNHISSTD MPASGLTTKH QEQPGPGMPL 180 SLPDRPDQPE CQYYMKTGNC KYGSSCKYHH PKERNEPAMA TIGALGLPLR PGQPVCTFYA 240 AYGSCNYGTA CKFDHPLMGY YGYSLPPFTY PGQPALVPNQ RSLQVIWTSA GNSSSKASNL 300 PDPLAISEKG GAQQNPQTHE HGNPTANTLN NESHSESPWD KVDIR

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSQLFLQFFL KTGSCKYGIT CKYHHPRDKH EIHMVQLNVL GLPIRKDEKP CAYYMRTGSC  60
KYGVTCKFNH PQPASRGTSF PVMGSSVYDY SGYMAPTSGP HVIGGISQWN LSRIPYMSNP  120
TTQDLPAYVP LVLPPSQGTI PVPQGWISYM GNTNHISSTD MPASGLTTKH QEQPGPGMPL  180
SLPDRPDQPE CQYYMKTGNC KYGSSCKYHH PKERNEPAMA TIGALGLPLR PGQPVCTFYA  240
AYGSCNYGTA CKFDHPLMGY YGYSLPPFTY PGQPALVPNQ RSLQVIWTSA GNSSSKASNL  300
PDPLAISEKG GAQQNPQTHE HGNPTANTLN NESHSESPWD KVDIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	7e-67	C3H family protein