PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW01702.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 744aa MW: 79949.5 Da PI: 6.2356

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW01702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	317	337	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RWW01702.1 317 PCPDFRK-GACRRGDMCEYAHG 337 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MCGGPERIKS SSSSASSLTP ASPEDQQQRS PAAGMNLLTV DIDNSSSLLE LAANDDVDAL 60 KVALDRDPSA IDEVGLWYGR RKGSNRMVLE HRTPLMVAAT YGSLDVLKLI VSLPSVDVNR 120 VSGPDSTTAL HCAASGGSLQ AVDSVKILLA AGADPTLVDA NGNRPADVIV VPPKVAFAKT 180 VLEQLLGRSA SLSDGSYHSH LPLHVMTSSP NSSSPPLSLS PGEDGSPSSV SNSSPPTAKF 240 LDLPPVTVSE KKEYPVDPSI PDIKNSIYAT DEFRMFSFKI RPCSRAYSHD WTECPFVHPG 300 ENARRRDPRK YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTNCS 360 RRVCFFAHTN DELRPLYMST GSAVPSPRAS SSAMEMAAAM GFMPGSPSSV SAIMSPFTPP 420 MSPSANGVGQ SSLAWPQSNV PMLNLSASNL QSSRLRSSLS ARDMPVNDFS VMTEFDTQQL 480 LSDLYYPHPS PSVGSRSVLT KTLTPSNLDD FFAAEVASSP RYNSDHGTIF SPSQRTAVMN 540 QFQQQESLLS PINTSVFSPK AVDTQHLPAH SSILQSSLNV SSPGLMSPRS VDPASPMSSR 600 VAILTQRDKQ QWQQSLRSLS SRDLSPISST IVGSSVNSSW SKWASPSDTA DWGVNGKELG 660 HLRRSSSFEL RGNGEEPDVS WVHSLVKESP PEKVVSAAMV PAGPSDFSAI GAEGSNSNDQ 720 LDGHDQAAVL GAWLEQMQLD QMVS

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MCGGPERIKS SSSSASSLTP ASPEDQQQRS PAAGMNLLTV DIDNSSSLLE LAANDDVDAL  60
KVALDRDPSA IDEVGLWYGR RKGSNRMVLE HRTPLMVAAT YGSLDVLKLI VSLPSVDVNR  120
VSGPDSTTAL HCAASGGSLQ AVDSVKILLA AGADPTLVDA NGNRPADVIV VPPKVAFAKT  180
VLEQLLGRSA SLSDGSYHSH LPLHVMTSSP NSSSPPLSLS PGEDGSPSSV SNSSPPTAKF  240
LDLPPVTVSE KKEYPVDPSI PDIKNSIYAT DEFRMFSFKI RPCSRAYSHD WTECPFVHPG  300
ENARRRDPRK YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTNCS  360
RRVCFFAHTN DELRPLYMST GSAVPSPRAS SSAMEMAAAM GFMPGSPSSV SAIMSPFTPP  420
MSPSANGVGQ SSLAWPQSNV PMLNLSASNL QSSRLRSSLS ARDMPVNDFS VMTEFDTQQL  480
LSDLYYPHPS PSVGSRSVLT KTLTPSNLDD FFAAEVASSP RYNSDHGTIF SPSQRTAVMN  540
QFQQQESLLS PINTSVFSPK AVDTQHLPAH SSILQSSLNV SSPGLMSPRS VDPASPMSSR  600
VAILTQRDKQ QWQQSLRSLS SRDLSPISST IVGSSVNSSW SKWASPSDTA DWGVNGKELG  660
HLRRSSSFEL RGNGEEPDVS WVHSLVKESP PEKVVSAAMV PAGPSDFSAI GAEGSNSNDQ  720
LDGHDQAAVL GAWLEQMQLD QMVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein