PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW00901.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 537aa MW: 57745.6 Da PI: 8.365

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW00901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RWW00901.1 41 FVCEVCNKGFQREQNLQLHRRGH 63 89*******************88 PP
2	zf-C2H2	11.7	0.00077	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + RWW00901.1 117 WKCDKCSKRYAVQSDWKAHSKIC 139 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MKYLSSLSLS FALYVHAVII TDPDSEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR 60 RGHNLPWKLK QKNPNEVRRR VYLCPEPTCV HHDPSRALGD LTGIKKHYCR KHGEKKWKCD 120 KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ EGARIPAGMN 180 TIGGHAYANR GINLDLPQLS SQLSSLQDQA HHPSTDLLRL RGSSGSAQFQ QLNATTSPFY 240 LGGASSQGFG ENLELLPSKP FHAMMQLQDL QTNNSASSPA AAAAAAAANL FNLGFFSSSG 300 STSTINHGSS AGNQSGLLLG PNQFSNAGGG TEPMSLFTGE LLSDHTDTNM SSLYTHSLHT 360 EPVVPQMSAT ALLQKAAQMG ATPIGASGSS LLGEFSGSYP GGARHVGYRP NPKEGGGESS 420 GTHVNDENHF QDIMNSLANG NSGVFGGVDE QVSGFSGFNP GFGAMVEDKL HRNLSTGGFG 480 GSDILTRDFL GVGSMMRSMR GRIPAREQQL GIDMDSLDHS EMKPGSSTRS FGGGRLQ

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MKYLSSLSLS FALYVHAVII TDPDSEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR  60
RGHNLPWKLK QKNPNEVRRR VYLCPEPTCV HHDPSRALGD LTGIKKHYCR KHGEKKWKCD  120
KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ EGARIPAGMN  180
TIGGHAYANR GINLDLPQLS SQLSSLQDQA HHPSTDLLRL RGSSGSAQFQ QLNATTSPFY  240
LGGASSQGFG ENLELLPSKP FHAMMQLQDL QTNNSASSPA AAAAAAAANL FNLGFFSSSG  300
STSTINHGSS AGNQSGLLLG PNQFSNAGGG TEPMSLFTGE LLSDHTDTNM SSLYTHSLHT  360
EPVVPQMSAT ALLQKAAQMG ATPIGASGSS LLGEFSGSYP GGARHVGYRP NPKEGGGESS  420
GTHVNDENHF QDIMNSLANG NSGVFGGVDE QVSGFSGFNP GFGAMVEDKL HRNLSTGGFG  480
GSDILTRDFL GVGSMMRSMR GRIPAREQQL GIDMDSLDHS EMKPGSSTRS FGGGRLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-104	C2H2 family protein