PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV99515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 389aa MW: 42870.9 Da PI: 9.0651 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.9e-10 | 21 | 47 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+++H+p RWV99515.1 21 PGEPDCTYYLRTGLCRFGMTCRYNHPP 47 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.1 | 1.2e-12 | 70 | 94 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtGtCk+G++CkF+H++ RWV99515.1 70 QPECQYYLRTGTCKFGATCKFHHPR 94 799********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.7e-12 | 116 | 140 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++r+G Ck+G++CkF+H++ RWV99515.1 116 ETECAYYMRNGVCKFGSTCKFNHPQ 140 578********************97 PP | |||||||
4 | zf-CCCH | 41.5 | 2.3e-13 | 274 | 299 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ RWV99515.1 274 DQPECQFYMKTGDCKFGAACKFHHPR 299 689*********************96 PP | |||||||
5 | zf-CCCH | 36.1 | 1.1e-11 | 321 | 345 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f++r+G+Ck+G+ CkF H++ RWV99515.1 321 EPLCIFYSRYGICKFGPHCKFDHPM 345 79*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence |
MWQISLREME SMESGPYPER PGEPDCTYYL RTGLCRFGMT CRYNHPPNRQ MCQAIAAARI 60 KGGFPERVGQ PECQYYLRTG TCKFGATCKF HHPRDKAGIA GRVQLNVLGY PIRPNETECA 120 YYMRNGVCKF GSTCKFNHPQ PSNTMANVRG STVYPGVHSP TSSQQSYPGG LTPLSRPSFI 180 PSPRWQGLSS YAQVIVPQGL VQVPSWNTFS GQLGSGSSSE SQLQLPRTTQ FYGTSRQNET 240 IAGVQGTIPS YRSSALPLGQ YVLARENVFP ERPDQPECQF YMKTGDCKFG AACKFHHPRE 300 RLLPPPNCLL SPLGLPLRAG EPLCIFYSRY GICKFGPHCK FDHPMATPIG LYAYSLPTSS 360 SADVPVSRNL LVSSSGPPPS LEAATGKAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-140 | C3H family protein |