PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV98653.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

GATA

Protein Properties

Length: 474aa MW: 51828.5 Da PI: 7.9679

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV98653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.5	4.4e-19	202	236	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l RWV98653.1 202 CTHCGAQKTPQWRAGPLGPKTLCNACGVRFKSGRL 236 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEAPKTSLLQ QQQQPQGSHG VLDEDVVWAA HDAEELEWVS LIIDDSLPDF SSCPDVVPLP 60 LAPRSPDETE TLAESRRAHI TEGDCSVSPT VCVLSTEAVV PVKAKRSKRS RTTAGCWSVS 120 RPLPFAESSS DSITTTTSSS SASSFSSPAL SFHRVTDHLS AAGEKSILFC GGLPRDKQQK 180 PNKHRRKPKS PPSATTSNER RCTHCGAQKT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY 240 RPACSPTFVS HVHSNCHRKV LEMRREKQAA APAPAPPVTS FSTRTTGPAE PVDLYVILKF 300 VHIKMEITAP NDGKDLETST IPGGNAEIDR KSTVGSQFRP LLVEEERKKK REKNLVPPRA 360 ALPRFPCAIC HPRVKNCPRN PSPIGDFFAG GDSFSLRGEK ERSDREMKKD PGKVDYLLLP 420 GDLLPEFGGL LPNSLHPTPR KSIETFNTDA EAEEDDQEEK GAEIGSLFSF VGQF

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEAPKTSLLQ QQQQPQGSHG VLDEDVVWAA HDAEELEWVS LIIDDSLPDF SSCPDVVPLP  60
LAPRSPDETE TLAESRRAHI TEGDCSVSPT VCVLSTEAVV PVKAKRSKRS RTTAGCWSVS  120
RPLPFAESSS DSITTTTSSS SASSFSSPAL SFHRVTDHLS AAGEKSILFC GGLPRDKQQK  180
PNKHRRKPKS PPSATTSNER RCTHCGAQKT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY  240
RPACSPTFVS HVHSNCHRKV LEMRREKQAA APAPAPPVTS FSTRTTGPAE PVDLYVILKF  300
VHIKMEITAP NDGKDLETST IPGGNAEIDR KSTVGSQFRP LLVEEERKKK REKNLVPPRA  360
ALPRFPCAIC HPRVKNCPRN PSPIGDFFAG GDSFSLRGEK ERSDREMKKD PGKVDYLLLP  420
GDLLPEFGGL LPNSLHPTPR KSIETFNTDA EAEEDDQEEK GAEIGSLFSF VGQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	353	RKKKREK
2	347	354	RKKKREKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	9e-40	GATA family protein