PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV93472.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 740aa MW: 79603.4 Da PI: 6.4256

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV93472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	318	338	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RWV93472.1 318 PCPDFRK-GACRRGDMCEYAHG 338 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MCGGPGRLKS SASSSLSPSP TSQEEHQQRS LAAGMSRLTV EIDSFSLSLL ELAANNDVDA 60 VRLFLDRDPS AVDEVGLWYG RLKGSNRMVL EQRSPLMVAA TYGSLDVLNL ILSLPSVDVN 120 RVAGLDSTTA LHCAASGGSL EAVDAVRILL AAGADPALVD GSGNRPADVI VVPPKLPDVK 180 TALEQLLGRS TNASGGSDHH HHPLRVMTSS PNSISPPLSL SPDEEGSPLS NSTASPPMAK 240 FPHLAPVVVS EKKEYPVDPS LPDIKNSIYA TDEFRMFSFK IRPCSRAYSH DWTECPFVHP 300 GENARRRDPR KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC 360 CRRVCFFAHT NEELRPLYVS TGSAVPSPRS SSAAMEMAAA MGLMPGSPSS VSAVMSPFTP 420 PMSPSANGIG HSSASWPQPN VPTLNLPASN LQSSRLRSSL SARDIPVDDL SVISEFDTQQ 480 LLSDLCYSHP SSSAGNRSIR TKTLIPSNLD DLFSSEIASS PRYNSDQGSI FSPSHRTAVF 540 NQFQQQQSLL SPINTNVFSP KAVDAQHLPA HSSLLQASLN VSSPGLMSPR SVEPVSPMSS 600 RLAMLTQRER QQQSLRSLSS RDLGPISSPI VGSPVNSSWS KWASPSGVPD WGVNSEELGR 660 LRRSSSFELR GNGEEPDLSW VHSLVRESPT EKVVSDVATA PTGPTGGAEC LNSNVEMDGH 720 DQAAVLGAWL EQMQLDQMVT

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MCGGPGRLKS SASSSLSPSP TSQEEHQQRS LAAGMSRLTV EIDSFSLSLL ELAANNDVDA  60
VRLFLDRDPS AVDEVGLWYG RLKGSNRMVL EQRSPLMVAA TYGSLDVLNL ILSLPSVDVN  120
RVAGLDSTTA LHCAASGGSL EAVDAVRILL AAGADPALVD GSGNRPADVI VVPPKLPDVK  180
TALEQLLGRS TNASGGSDHH HHPLRVMTSS PNSISPPLSL SPDEEGSPLS NSTASPPMAK  240
FPHLAPVVVS EKKEYPVDPS LPDIKNSIYA TDEFRMFSFK IRPCSRAYSH DWTECPFVHP  300
GENARRRDPR KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC  360
CRRVCFFAHT NEELRPLYVS TGSAVPSPRS SSAAMEMAAA MGLMPGSPSS VSAVMSPFTP  420
PMSPSANGIG HSSASWPQPN VPTLNLPASN LQSSRLRSSL SARDIPVDDL SVISEFDTQQ  480
LLSDLCYSHP SSSAGNRSIR TKTLIPSNLD DLFSSEIASS PRYNSDQGSI FSPSHRTAVF  540
NQFQQQQSLL SPINTNVFSP KAVDAQHLPA HSSLLQASLN VSSPGLMSPR SVEPVSPMSS  600
RLAMLTQRER QQQSLRSLSS RDLGPISSPI VGSPVNSSWS KWASPSGVPD WGVNSEELGR  660
LRRSSSFELR GNGEEPDLSW VHSLVRESPT EKVVSDVATA PTGPTGGAEC LNSNVEMDGH  720
DQAAVLGAWL EQMQLDQMVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein