PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWV91216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26459.4 Da PI: 9.1904 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.5 | 3.2e-17 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n+s r tf kR++g++KK +EL +LC++++++ii++++ + RWV91216.1 11 IANDSTRRATFKKRKKGLMKKVSELATLCNVKACMIIYGPQEH 53 89*************************************9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MARKKVNLAW IANDSTRRAT FKKRKKGLMK KVSELATLCN VKACMIIYGP QEHQPEAWPS 60 AQEAARLLER FKSMPEMEKS RKMMDQEGFL RQRAAKLQEQ LRRQERDNRE LEVSLLMHQA 120 VAGRSLYDVN VEDATSLAWM VDSKLKSVQD RINQQTTQLA LRSAAEASGT AQITAKNPME 180 MAMDSLQRQN WLLDAMHPSE NLVFGGGGGE EIMPISCVEH NSSWLDLYFP FN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVNLAWIANDSTRRATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-47 | M-type_MADS family protein |