PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV83806.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 751aa MW: 80946.5 Da PI: 6.8729

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV83806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	316	336	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RWV83806.1 316 PCPDFRK-GSCRRGDMCEYAHG 336 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MCGGPERIKP SSSSSPAPTS RGEHQQHRPV LGMNHLTIEI ADSSSLLELA ANNDAETFRR 60 SLDRDPLAVD EVGLWYGRRK GSNRMVLEHR TPLMVAATYG SLDVLNFILS LPSVEVNRAS 120 APVNTTALHC AASGGSFDAV DAVKALLAAG ADPTLVDVNG DRPADVIVVP PKLPDVKSAL 180 EQLLGRRSNA SGGDADHRHL PLGVMTDSTS SNSPPRSLSP DEDGTRSSSS TSSPPTAKDP 240 DLPPVRLSEK KEYPVDPSLP DIKNSIYATD EFRMFSFKIR PCSRAYSHDW TECPFVHPGE 300 NARRRDPRKY HYSCVPCPDF RKGSCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCSR 360 RVCFFAHTNE ELRPLYVSTG SAVPSPRASS AAMEMAAAMG FMPGSPSSVS AVMSPFTPPM 420 SPSANGIGHS SLGWPQPNMP TLNLPASNLQ ASRLRSSLSV RNIPADDLSA ISEFDTQQLL 480 NDLCYSRLSS SAGNCTIRTN TLNPSNLDDL FSAEIAISPR YNSDQGAVFS PSHKASILNQ 540 FQQQQQQSLL SPINTSVFSP KAVDPQQLTA HSALLQASLN TSSPGVMSPR SMEPVSPVGS 600 RLAVLSQRER QQQTLRSLSS RDLGPISSHV VGSPVNSSWS KWASPSGTPD WTLNGEELGR 660 LRRSSSFELR GNGDEPDLSW VHSLVRESPP EKVISAAMAS AGPSSLPAAG GESLNSNGQM 720 NGHDQAAVLG AWLEHQEILD GRHSVIFNSN I

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MCGGPERIKP SSSSSPAPTS RGEHQQHRPV LGMNHLTIEI ADSSSLLELA ANNDAETFRR  60
SLDRDPLAVD EVGLWYGRRK GSNRMVLEHR TPLMVAATYG SLDVLNFILS LPSVEVNRAS  120
APVNTTALHC AASGGSFDAV DAVKALLAAG ADPTLVDVNG DRPADVIVVP PKLPDVKSAL  180
EQLLGRRSNA SGGDADHRHL PLGVMTDSTS SNSPPRSLSP DEDGTRSSSS TSSPPTAKDP  240
DLPPVRLSEK KEYPVDPSLP DIKNSIYATD EFRMFSFKIR PCSRAYSHDW TECPFVHPGE  300
NARRRDPRKY HYSCVPCPDF RKGSCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCSR  360
RVCFFAHTNE ELRPLYVSTG SAVPSPRASS AAMEMAAAMG FMPGSPSSVS AVMSPFTPPM  420
SPSANGIGHS SLGWPQPNMP TLNLPASNLQ ASRLRSSLSV RNIPADDLSA ISEFDTQQLL  480
NDLCYSRLSS SAGNCTIRTN TLNPSNLDDL FSAEIAISPR YNSDQGAVFS PSHKASILNQ  540
FQQQQQQSLL SPINTSVFSP KAVDPQQLTA HSALLQASLN TSSPGVMSPR SMEPVSPVGS  600
RLAVLSQRER QQQTLRSLSS RDLGPISSHV VGSPVNSSWS KWASPSGTPD WTLNGEELGR  660
LRRSSSFELR GNGDEPDLSW VHSLVRESPP EKVISAAMAS AGPSSLPAAG GESLNSNGQM  720
NGHDQAAVLG AWLEHQEILD GRHSVIFNSN I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein