PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022777089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19690.3 Da PI: 8.3958 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.1 | 3.1e-20 | 29 | 75 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 + e++s+rqvtfskRr g++ KA+ELS+LC++ev ++ +s++ ++y+ XP_022777089.1 29 KLEDESKRQVTFSKRRRGLFNKAKELSTLCGVEVGILTLSKSRRVYT 75 6799****************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MEDNVLMSNA TEAKKTRSSR GRQRIEIKKL EDESKRQVTF SKRRRGLFNK AKELSTLCGV 60 EVGILTLSKS RRVYTNDNVE AVLDRYLAES SGQGNYSWIK QKEVKEDISG GFWLDQPIEN 120 MGLVELLEYA MALNDLRKNA EARVEELSIQ KSTYLWQYVA DQELNKDRDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 5e-28 | M-type_MADS family protein |