PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022773890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28505.6 Da PI: 5.8028 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELS+LCda+va+iif stgkl+ey+s XP_022773890.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSILCDADVALIIFTSTGKLFEYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 51.3 | 5e-18 | 132 | 196 | 34 | 98 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++R++ Ge+L+ L+++eL+qLe+ Le +l+++ +kK + ++++i++lq+k +l een++L+ ++ XP_022773890.1 132 QNRQMRGEELQGLNFEELEQLEKSLEAGLSRVIEKKGQRIKNEIDDLQRKGMQLLEENERLKLQI 196 56***********************************************************9887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSILCD ADVALIIFTS TGKLFEYASS 60 SMKEILERHN LRSKNLEKLE QQPLELQLVE NSNLSMLTME VAEKSHQLRY TFILLLISLF 120 KLCIWIYCDF AQNRQMRGEE LQGLNFEELE QLEKSLEAGL SRVIEKKGQR IKNEIDDLQR 180 KGMQLLEENE RLKLQISNGQ PQVAGDSENM FCEEGQSSES VTNVCTSKGT PHDHESSDTS 240 LKLGLPYSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-95 | MIKC_MADS family protein |