PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022762555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 26813.8 Da PI: 5.2707 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.1 | 4.7e-23 | 31 | 74 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++s rqvtfskRrng++KKA+EL+vLC+a++ +i+fs++gk XP_022762555.1 31 KLEDESSRQVTFSKRRNGLFKKASELCVLCGANIGIIVFSPKGK 74 6799***************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MATLKQTNNK ENKSSSTTKA TRGRQKIQIK KLEDESSRQV TFSKRRNGLF KKASELCVLC 60 GANIGIIVFS PKGKPFCFGH PNVETIVDRY LSGNPAMHDQ EDGSATTGAT PSFEEFNEEC 120 REALEKLQEE KKRTKEIEEE KEEKKNKGEF WWDEPIDDMG LEELEAYVKA MEELRNNVAK 180 RANELMGDVF ASATVANADG LGHRFADQNG GFGSGGGYGD FGLGGDGFNF GHGPGLHFGG 240 GGQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-40 | M-type_MADS family protein |