PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022756781.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 734aa MW: 80112.5 Da PI: 5.878

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022756781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022756781.1 308 PCPDFRK-GACRRGDMCEYAHG 328 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MCGGPERSKS EFTPTSTEET TTNTKDMNCV TMKTENSFSS LLELASNNDV EGIKQSIEQD 60 ASSIDEVGLW YSREKGSNQI VAKHRTPLMV AATYGSVDVV KLILTHSGAD VNLSCGTEKS 120 TALHCAASGG SLHAFDVVKL LLSAGADPNC TDAIGCRPAD VIIVHPKLQS MRAVLEELLS 180 GHVSDDTFGE HNLRMSVDDS TSSSPTLSSS LENGSPPSPS DLTSSPMASK FLDMPFNSTI 240 EKKEYPVDPS LPDIKNSIYA TDEFRMYSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR 300 KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT 360 AEELRPLYVS TGSAVPSPRS SASVVNFMDM AAAMNVFPGS PSTVSSPPPS PFNQPMSPSS 420 NGLSHSPVAW SQPNVPTLQL PGSNLQSSRL RSSLSARDIP PEDFDMLPDF DAQQQILNDL 480 TCFSRSHNSS VSMSRSGRSK TLTPSNLEEL FSAEISSTPQ YTDQTAASAV FSPTHKSTVL 540 NQFHQQQSML SPINTSVFSP KNIEHLRLQA FFGVGSPGRM SPRSAEPISP MAARLSAFVQ 600 LEKQQQQLRS ISSRELGFNN HASIAGAPVD SCWSKWGSPN GKLDWSVSGD EMGQLRRSSS 660 FEPGNIGEEP DLSWVQSLVK ESPPEMVKEK LAVSLPVDAS SGEVLNNSNS QIDSVDHSVI 720 GAWLEQMQHD QLVV

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MCGGPERSKS EFTPTSTEET TTNTKDMNCV TMKTENSFSS LLELASNNDV EGIKQSIEQD  60
ASSIDEVGLW YSREKGSNQI VAKHRTPLMV AATYGSVDVV KLILTHSGAD VNLSCGTEKS  120
TALHCAASGG SLHAFDVVKL LLSAGADPNC TDAIGCRPAD VIIVHPKLQS MRAVLEELLS  180
GHVSDDTFGE HNLRMSVDDS TSSSPTLSSS LENGSPPSPS DLTSSPMASK FLDMPFNSTI  240
EKKEYPVDPS LPDIKNSIYA TDEFRMYSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT  360
AEELRPLYVS TGSAVPSPRS SASVVNFMDM AAAMNVFPGS PSTVSSPPPS PFNQPMSPSS  420
NGLSHSPVAW SQPNVPTLQL PGSNLQSSRL RSSLSARDIP PEDFDMLPDF DAQQQILNDL  480
TCFSRSHNSS VSMSRSGRSK TLTPSNLEEL FSAEISSTPQ YTDQTAASAV FSPTHKSTVL  540
NQFHQQQSML SPINTSVFSP KNIEHLRLQA FFGVGSPGRM SPRSAEPISP MAARLSAFVQ  600
LEKQQQQLRS ISSRELGFNN HASIAGAPVD SCWSKWGSPN GKLDWSVSGD EMGQLRRSSS  660
FEPGNIGEEP DLSWVQSLVK ESPPEMVKEK LAVSLPVDAS SGEVLNNSNS QIDSVDHSVI  720
GAWLEQMQHD QLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein