PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022754163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27729.8 Da PI: 10.2596 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50 | 3.8e-16 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ t kR++g++KK +ELS+LC++e++ ii+s++ XP_022754163.1 11 ITNDFARKATNKKRKKGLMKKVSELSTLCGIEACAIIYSPNE 52 8999***********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MTRQKVKLAY ITNDFARKAT NKKRKKGLMK KVSELSTLCG IEACAIIYSP NESQPEVWPS 60 PVGVQRVLSE FKKLPEMKQN KNMVDQESFL RQRIAKANEQ LQKQCKNNRE KEMKQLMLQN 120 LTGKGLHNLN MMDSNELGWL IEQNLKDINK RVDTLTKASH SQGSAAASSG TMVTPEPKSK 180 SGEKVQAGRS DLEVNMDTMQ RQQRITDLMN PQDHLGFGGD EMMPPFGDNN RNALWSNAFF 240 PREK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-61 | M-type_MADS family protein |