PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022754068.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 715aa MW: 78538.5 Da PI: 5.8939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022754068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.5e-09	321	342	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ GtCk+Gd C +aHg XP_022754068.1 321 VPCPDFRK-GTCKRGDLCEYAHG 342 69****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MGFILFRLFT DQLDRSMCGS LEQLSTKATI PSSSEETETM DCLTGVVGSE YSFSVLLEFA 60 ADNDVEGFRR SLTTCDVSLV GEVGLWYGRQ KCSKHIVVEH RTPLMIAAKY GSVEFVKLIL 120 SLSEVDVNLF CGPDKSTALH CAASGGSVRA VEVVRLLLHA GADPCVIDAN GHRPFDVIAA 180 PWNMPQIKVA LEELLNSDGP VCLEDVQESA VNFRSGSSSS LSSSLDSGFS SLVSDANISV 240 VTCKPTDNTV SSAPERKEYP VDPSIPDIKS SIYGTDEFRM FSFKIRPCSR AYSHDWTECP 300 FVHPGENARR RDPRKFHYCG VPCPDFRKGT CKRGDLCEYA HGVFESWLHP AQYRTRLCKD 360 GTTCNRRVCF FAHRPEELRP LYVSSGSGIQ SPQSTASSVS TMDKTAVMNF LPGSPSLLSA 420 VSMSPFSPTI SPSASVITQA PIGWPQQHIP TLHLPGSNIQ ASRLRSSLNA GDMPTMELNM 480 SQDFEMYQPQ HLLDGIFSNG VSSPRCLDQV TAMPILSSAH KSVLLNQLHQ QQRVLSPMKT 540 NIFSPKNDHL LFQSAFDASL SERTLPWNVE PLSPLNSQLS AFADIEKQHQ SFRSLSSREL 600 GYKLSDDLEP KDVVGSPVNS WSKRETPNDK LDWPVQEDEL GQFRNSCSTR PHGVEPAVSW 660 AQSLVKQSPS VQTTAAAASM TVSVEGSNSN SSSELSDNAI FLAWHEQLQI DKIMA

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MGFILFRLFT DQLDRSMCGS LEQLSTKATI PSSSEETETM DCLTGVVGSE YSFSVLLEFA  60
ADNDVEGFRR SLTTCDVSLV GEVGLWYGRQ KCSKHIVVEH RTPLMIAAKY GSVEFVKLIL  120
SLSEVDVNLF CGPDKSTALH CAASGGSVRA VEVVRLLLHA GADPCVIDAN GHRPFDVIAA  180
PWNMPQIKVA LEELLNSDGP VCLEDVQESA VNFRSGSSSS LSSSLDSGFS SLVSDANISV  240
VTCKPTDNTV SSAPERKEYP VDPSIPDIKS SIYGTDEFRM FSFKIRPCSR AYSHDWTECP  300
FVHPGENARR RDPRKFHYCG VPCPDFRKGT CKRGDLCEYA HGVFESWLHP AQYRTRLCKD  360
GTTCNRRVCF FAHRPEELRP LYVSSGSGIQ SPQSTASSVS TMDKTAVMNF LPGSPSLLSA  420
VSMSPFSPTI SPSASVITQA PIGWPQQHIP TLHLPGSNIQ ASRLRSSLNA GDMPTMELNM  480
SQDFEMYQPQ HLLDGIFSNG VSSPRCLDQV TAMPILSSAH KSVLLNQLHQ QQRVLSPMKT  540
NIFSPKNDHL LFQSAFDASL SERTLPWNVE PLSPLNSQLS AFADIEKQHQ SFRSLSSREL  600
GYKLSDDLEP KDVVGSPVNS WSKRETPNDK LDWPVQEDEL GQFRNSCSTR PHGVEPAVSW  660
AQSLVKQSPS VQTTAAAASM TVSVEGSNSN SSSELSDNAI FLAWHEQLQI DKIMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein