PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022749718.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 352aa MW: 39489.1 Da PI: 7.2932

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022749718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.4e-08	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C+ f+ GtC+ G+ C+FaHg XP_022749718.1 89 FKTRMCSKFRL-GTCRNGEGCNFAHG 113 69*******.***********8 PP
2	zf-CCCH	27.5	5.3e-09	150	172	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H XP_022749718.1 150 MKLCKKFYNGEECPYGDRCNFLH 172 689****66********** PP
3	zf-CCCH	42.1	1.4e-13	235	261	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_022749718.1 235 WKTKLCIKWETTGHCPFGEKCHFAHGQ 261 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MSYPESCSSF MRQHQSTYAG SDAIGIWPEF AMNDGQFDPH SEVEQQQQPP FKRPRHSDDS 60 QSNVVRCTPT NFRMPLNPAV NKGTSNIFFK TRMCSKFRLG TCRNGEGCNF AHGIEDLRQP 120 PPNWQELVGG CDEERTSGNW DDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEAPSKFRD 180 DMGRFRESSA ISIGTTGPSA GHGTASDHSE GNRPLNNTDS DAFRGNMKPM YPVYWKTKLC 240 IKWETTGHCP FGEKCHFAHG QSELQGIGVR VDGDLGNTGP GLARTASIST KIHNLPADDP 300 PTVTASVRSL NEEAQAKKCL FKWKGPRKIN RIYGDWLDDL PLVHNLPSQV ES

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MSYPESCSSF MRQHQSTYAG SDAIGIWPEF AMNDGQFDPH SEVEQQQQPP FKRPRHSDDS  60
QSNVVRCTPT NFRMPLNPAV NKGTSNIFFK TRMCSKFRLG TCRNGEGCNF AHGIEDLRQP  120
PPNWQELVGG CDEERTSGNW DDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEAPSKFRD  180
DMGRFRESSA ISIGTTGPSA GHGTASDHSE GNRPLNNTDS DAFRGNMKPM YPVYWKTKLC  240
IKWETTGHCP FGEKCHFAHG QSELQGIGVR VDGDLGNTGP GLARTASIST KIHNLPADDP  300
PTVTASVRSL NEEAQAKKCL FKWKGPRKIN RIYGDWLDDL PLVHNLPSQV ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-100	C3H family protein