PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022745711.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 727aa MW: 79118.7 Da PI: 6.5503

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022745711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022745711.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MCTGLERLKH TPSPTTSNIS FENRRNPSVD MNHLTVETED TFASLLVLAA NNDFEGFKGS 60 IERDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSL SDADVNRVCG 120 HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANMADANGH HPVDVIVVPP KLQALKLTLE 180 ELLATESSVI ERNLRVSTAV ANSNSPPLSS FLENGSPSSG SDYPMKSKST DPPISYTSEK 240 KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHAAE 360 ELRPLFVSTG SAVLSPRSST AGATAMDFAA ALSLMPGSPS SLSVISPSPF TPPMSPSANG 420 MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DFNLLSDFDV QQQQLINELS 480 SVTQPSLSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQSLASAVFS PTHKSAVLNQ 540 FQQQQTMLSP INTKFSPKNI EHPLLQASLS GRMSPRNVEL ISPMSSRVSM LAQHEKQQQF 600 RSLSSRELGS GSAAIVGCPV NSWSKWGSSN GKPDWAVNAD ELGKHRRSSS FELGNGDEPD 660 FSWVQSLVKE SPTEIKEKMA APVSSVAPNA SASEGSNMNS QIDPVDHAML GAWLEQMQLD 720 QLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MCTGLERLKH TPSPTTSNIS FENRRNPSVD MNHLTVETED TFASLLVLAA NNDFEGFKGS  60
IERDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSL SDADVNRVCG  120
HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANMADANGH HPVDVIVVPP KLQALKLTLE  180
ELLATESSVI ERNLRVSTAV ANSNSPPLSS FLENGSPSSG SDYPMKSKST DPPISYTSEK  240
KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHAAE  360
ELRPLFVSTG SAVLSPRSST AGATAMDFAA ALSLMPGSPS SLSVISPSPF TPPMSPSANG  420
MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAE DFNLLSDFDV QQQQLINELS  480
SVTQPSLSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQSLASAVFS PTHKSAVLNQ  540
FQQQQTMLSP INTKFSPKNI EHPLLQASLS GRMSPRNVEL ISPMSSRVSM LAQHEKQQQF  600
RSLSSRELGS GSAAIVGCPV NSWSKWGSSN GKPDWAVNAD ELGKHRRSSS FELGNGDEPD  660
FSWVQSLVKE SPTEIKEKMA APVSSVAPNA SASEGSNMNS QIDPVDHAML GAWLEQMQLD  720
QLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein