PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022742808.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28946.3 Da    PI: 5.5012
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022742808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.67e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRrng+lKKA ELSvLCdaev viifs+tgk+y +ss
  XP_022742808.1  9 KKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVGVIIFSNTGKVYQWSS 59
                    68***********************************************96 PP
2K-box55.81.9e-19801756100
           K-box   6 gksleeakaeslq.qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +e+kae++q  +++ Lk+e+  L+    +l G++L+ Ls+keL+qLe+qL+++l ++ ++K+++lleq+++++ +e+++ +en++Lrk++e
  XP_022742808.1  80 EHPSDEQKAENSQpIDVNTLKEEYIRLRAAYVRLNGKELDGLSFKELKQLEHQLNEGLLSVEEQKEQILLEQLKRSKLQEQKAIQENETLRKQVE 174
                     33356666666662599****************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_022742808.1 175 E 175
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSVLCD AEVGVIIFSN TGKVYQWSST  60
SMEHTLLRYS RGLAVGQSQE HPSDEQKAEN SQPIDVNTLK EEYIRLRAAY VRLNGKELDG  120
LSFKELKQLE HQLNEGLLSV EEQKEQILLE QLKRSKLQEQ KAIQENETLR KQVEELQQKT  180
SPNLLEFNPL QIRFSPTSPK ADRDCASDED DDDNDDNDHS DTSLHLGLSS DVGRKRKVAK  240
IEPVSTDSGS QLASE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-63MIKC_MADS family protein