PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022742015.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 454aa MW: 49963.1 Da PI: 8.2317

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022742015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	55	81	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022742015.1 55 PGEPDCSYYIRTGLCRFGATCRFNHPP 81 5789*********************97 PP
2	zf-CCCH	37.5	4.1e-12	102	126	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022742015.1 102 QPECQHYLKTGTCKFGATCKFHHPR 126 799********************96 PP
3	zf-CCCH	38.5	1.9e-12	148	172	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G++CkF+H++ XP_022742015.1 148 ETECDYYLKTGQCKFGSTCKFHHPQ 172 579********************97 PP
4	zf-CCCH	37.8	3.1e-12	307	333	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022742015.1 307 PGQPECQFYMKTGDCKFGAVCRFHHPR 333 5789*********************96 PP
5	zf-CCCH	40.7	4e-13	353	379	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ XP_022742015.1 353 PGEPLCIFYSRYGICKFGPSCKFNHPM 379 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MEFTFDAGLP MSRTAAAATV TEGTSFSPSL NQDAMWQMNL RSSETMESGP YPERPGEPDC 60 SYYIRTGLCR FGATCRFNHP PNRKLVIAAA RMKGEFPERV GQPECQHYLK TGTCKFGATC 120 KFHHPRDKAG IAGSVSLNIL GYPLRPNETE CDYYLKTGQC KFGSTCKFHH PQPTNMMVSL 180 RSSPIYPTVP SPTTPGQQSY PGGITNWSRA SFIPSPRWQG PSSYAPFILP QGMVSVPGWN 240 TYSGQLASVS SSENLQQTNA NNQIYGTSRQ NELATAGSQA SFSQFRSGSV PVGFYALQRE 300 NVFPERPGQP ECQFYMKTGD CKFGAVCRFH HPRERVLPAP DCLLSPIGLP LRPGEPLCIF 360 YSRYGICKFG PSCKFNHPMR IFTYNYSSSS PSDAPVHRFL GSSSGTAGLN LSSEDLVEAG 420 STKPRRVSLS ENRLLSSSDD NIDTEGQTLQ QDTD

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MEFTFDAGLP MSRTAAAATV TEGTSFSPSL NQDAMWQMNL RSSETMESGP YPERPGEPDC  60
SYYIRTGLCR FGATCRFNHP PNRKLVIAAA RMKGEFPERV GQPECQHYLK TGTCKFGATC  120
KFHHPRDKAG IAGSVSLNIL GYPLRPNETE CDYYLKTGQC KFGSTCKFHH PQPTNMMVSL  180
RSSPIYPTVP SPTTPGQQSY PGGITNWSRA SFIPSPRWQG PSSYAPFILP QGMVSVPGWN  240
TYSGQLASVS SSENLQQTNA NNQIYGTSRQ NELATAGSQA SFSQFRSGSV PVGFYALQRE  300
NVFPERPGQP ECQFYMKTGD CKFGAVCRFH HPRERVLPAP DCLLSPIGLP LRPGEPLCIF  360
YSRYGICKFG PSCKFNHPMR IFTYNYSSSS PSDAPVHRFL GSSSGTAGLN LSSEDLVEAG  420
STKPRRVSLS ENRLLSSSDD NIDTEGQTLQ QDTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein