PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022741058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 460aa MW: 48733.7 Da PI: 7.7699 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 43 | 68 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_022741058.1 43 DEADCIYYLRTGFCGYGSRCRFNHPR 68 6799********************96 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++r+G Ck+G++Ck++H++ XP_022741058.1 90 QPVCQYYMRMGRCKFGASCKYHHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.7e-12 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++a+tG+Ck+G +CkF+H+ XP_022741058.1 135 GEKECSYYAKTGQCKFGVTCKFHHP 159 7899********************8 PP | |||||||
4 | zf-CCCH | 42.3 | 1.3e-13 | 284 | 310 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+F+H+p XP_022741058.1 284 PGQPECQYYMKTGDCKYGSSCRFHHPP 310 5789*********************97 PP | |||||||
5 | zf-CCCH | 32.1 | 2e-10 | 332 | 356 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ C+F H++ XP_022741058.1 332 APPCTHYSQHGVCKFGAACRFDHSM 356 689********************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence |
MERDPESDPQ PEWTAPGPET GLEEPVWLLG LGGGSESYPE RPDEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVMGAGRDG VGEYPERVGQ PVCQYYMRMG RCKFGASCKY HHPKQGGGSV 120 SPMSLNYYGY PLRPGEKECS YYAKTGQCKF GVTCKFHHPS PSPAPQVAPV PTPVPAPPLY 180 SAVQSPSGPS SQQYGLVMAR PPLMPGPYVQ GLYGPLLLSP GVPSWNPYPA PVSPGTQPTV 240 GSSSIFRVTP LSPSAPAYTG SYQSVPSVGP SSSIQKEQLF PERPGQPECQ YYMKTGDCKY 300 GSSCRFHHPP EVIAPKADVI LSPLRFPLRP GAPPCTHYSQ HGVCKFGAAC RFDHSMGTLG 360 YGPSVSSLTD MPFVPFPVGS TYGTLAPTSL SSELGPELLS GSSKDPAPAI TSSSVSASSE 420 SVGSVFSKVA PVPHSSTQQS SRSSAPSTGS GSSSEAHTSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-144 | C3H family protein |