PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022730578.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family AP2
Protein Properties Length: 559aa    MW: 61022.8 Da    PI: 8.3015
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022730578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15183242155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_022730578.1 183 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 242
                     57*******************666664477446*************************98 PP
2AP247.16e-15285336155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_022730578.1 285 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 336
                     57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    
MDMNMGNMDS SSTRNWIAFS LSKHQQHLNL PSSSSHLCLY ETFTSSTTTT TAPTTTNSSA  60
AAEEDAGAGT IAGATDSSMF NGGTKLEDFL GGSSTTTGVG GVPLPQLPRH HQFSTETPVT  120
ISDNELYDSE LKTIAASFLR GFSSEQTDTH KQQQQQQLRQ HQQMPKAEPS PRGAVDTFGQ  180
RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY  240
WGPTTTTNFP IFNYEKELEE MKNMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ  300
ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSIANSNLPI  360
GGLSNKSRNC SDSASDSKST DDDRDHSSAS SAVTFASQPA ASSTLSFAIP IKQDPSDYWS  420
NIMGYNNTAV FLSNGKNPSV APTNFFHQSS NNGSGFQSPS GFSMDFGGNS AVNGSINNGF  480
FSGGGCVQQK QLQQQQQSGV ISSTSSLPFA TPIVLNNSGN NNYEGSSGYG SWNIAQSLHS  540
YQTAKPRLSV FQTPIFGME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-142AP2 family protein