PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022730221.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 710aa MW: 76957.3 Da PI: 5.4355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022730221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg XP_022730221.1 279 PCPEFRK-GTCRQGDNCEYAHG 299 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MCSGPKKKPT QIGFTMECES DKEVGFPQKF SILLELSASN DLIGFKSAIE EEGQDIDEPS 60 LWYGRRIGSK KMGFEERTPL LIASMFGSKD VVNYIIESGH VDVNRACGSD GATALHCAAA 120 GCTFDSAEVV KILLDASADT NSLDANGNRP GDLIAPACNS AFSLRKKMLD SLLKGSGSVG 180 EIEGLPAQVG NEMEGQEQEE SSSPRVLKDG TEKKEYPVDL TLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDNCEYAHGI 300 FECWLHPAQY RTRLCKDETN CTRRVCFFAH EPKELRPLYA STGSAVPSPR SYSATGSSLD 360 MGSMSPLALG SPSVMIPPTS TPPLTPTGTS SPMGGAMWPN QSSIIPPTLQ LPGSRLKTAL 420 SARDMDLDME LLGLESHRCR QQRQQQLIAE ISGLSSPTSW NNPLSAASAF SASGDRTGEL 480 NRLGGVKPTN LEDIFGSLDP TILPQLQAIS LDAAAPQLQS LTGVHTRQNI NQQLRASYPT 540 NLASSPVRAS PPFGIDPSGP SAAAVLSSRS AAFANRSHSF IERTAVNRHS VFSPASSASA 600 MPSNLSDWGS PDGKLDWGIQ GEELNKLRKS ASFAFRSSGR NLGNAAPSMS PTSDEPDVSW 660 VQSLVKDTPS AGQFSFEDEQ QQQCHLNTGV AEMLPAWVEQ LYMEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MCSGPKKKPT QIGFTMECES DKEVGFPQKF SILLELSASN DLIGFKSAIE EEGQDIDEPS  60
LWYGRRIGSK KMGFEERTPL LIASMFGSKD VVNYIIESGH VDVNRACGSD GATALHCAAA  120
GCTFDSAEVV KILLDASADT NSLDANGNRP GDLIAPACNS AFSLRKKMLD SLLKGSGSVG  180
EIEGLPAQVG NEMEGQEQEE SSSPRVLKDG TEKKEYPVDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDNCEYAHGI  300
FECWLHPAQY RTRLCKDETN CTRRVCFFAH EPKELRPLYA STGSAVPSPR SYSATGSSLD  360
MGSMSPLALG SPSVMIPPTS TPPLTPTGTS SPMGGAMWPN QSSIIPPTLQ LPGSRLKTAL  420
SARDMDLDME LLGLESHRCR QQRQQQLIAE ISGLSSPTSW NNPLSAASAF SASGDRTGEL  480
NRLGGVKPTN LEDIFGSLDP TILPQLQAIS LDAAAPQLQS LTGVHTRQNI NQQLRASYPT  540
NLASSPVRAS PPFGIDPSGP SAAAVLSSRS AAFANRSHSF IERTAVNRHS VFSPASSASA  600
MPSNLSDWGS PDGKLDWGIQ GEELNKLRKS ASFAFRSSGR NLGNAAPSMS PTSDEPDVSW  660
VQSLVKDTPS AGQFSFEDEQ QQQCHLNTGV AEMLPAWVEQ LYMEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein