PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022728737.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C2H2

Protein Properties

Length: 470aa MW: 52449.6 Da PI: 8.9441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022728737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp C+k F++ L Hir H XP_022728737.1 44 HICPVCSKEFTSGKALGGHIRIH 66 68*******************99 PP
2	zf-C2H2	14.8	8.2e-05	126	147	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++ +L H+r+H XP_022728737.1 126 SCCICNKGFRSMKSLFGHMRNH 147 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MDDQAVDKVI ENMEKDQSVS IETSDLALSK PNKLFLKLKI SKKHICPVCS KEFTSGKALG 60 GHIRIHMKGS KNGRHRKISQ LQPRNIHRAK AKKRISQNMV LPKATDGAVD AVDLPLNDQE 120 VNEQVSCCIC NKGFRSMKSL FGHMRNHPER GWRGIRPPPS DKNSCCSSVS ENDEAVEVDQ 180 INCATEKGLA SGSDLLKSLP KWTNTAKRCG KLTFDENEVP EAAYCLMKLA RGDSFDLGQS 240 SVGFQRKYSP TDNPKTIDKT RSWGLANKTS SEDKKRSNIV LGKKMGEGKG KARLKTEWDQ 300 EKVASECKQG DIYSPDKKKK KGKVLAKELN CDKFIERKMM VGENKMKLTC ADDRIIENNS 360 WFDHFQKFPM KPNEEEGDPL TIEAGRYRGR ISYSSQTPCF YPKNPSGGLF EAPLNETESP 420 AEGKHLYSKT LFPKTANQAA EGSQVCSPKI LDFDLNEPYA GLDDDEATGT

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MDDQAVDKVI ENMEKDQSVS IETSDLALSK PNKLFLKLKI SKKHICPVCS KEFTSGKALG  60
GHIRIHMKGS KNGRHRKISQ LQPRNIHRAK AKKRISQNMV LPKATDGAVD AVDLPLNDQE  120
VNEQVSCCIC NKGFRSMKSL FGHMRNHPER GWRGIRPPPS DKNSCCSSVS ENDEAVEVDQ  180
INCATEKGLA SGSDLLKSLP KWTNTAKRCG KLTFDENEVP EAAYCLMKLA RGDSFDLGQS  240
SVGFQRKYSP TDNPKTIDKT RSWGLANKTS SEDKKRSNIV LGKKMGEGKG KARLKTEWDQ  300
EKVASECKQG DIYSPDKKKK KGKVLAKELN CDKFIERKMM VGENKMKLTC ADDRIIENNS  360
WFDHFQKFPM KPNEEEGDPL TIEAGRYRGR ISYSSQTPCF YPKNPSGGLF EAPLNETESP  420
AEGKHLYSKT LFPKTANQAA EGSQVCSPKI LDFDLNEPYA GLDDDEATGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	347	KKKKKGKVLAKELNCDKFIERKMMVGENKMK
2	318	348	KKKKKGKVLAKELNCDKFIERKMMVGENKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	4e-21	C2H2 family protein