PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022728552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19533.1 Da PI: 6.8463 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.8 | 9.3e-21 | 29 | 74 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 + e++s+rqvtfskRr g++ KA+ELS+LC++ev ++ +s++g++y XP_022728552.1 29 KLEDESKRQVTFSKRRRGLFNKAKELSTLCGVEVGILTLSKSGRVY 74 6799****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MEDSVLMSNV TEAKKTRSSR GRQRIEIKKL EDESKRQVTF SKRRRGLFNK AKELSTLCGV 60 EVGILTLSKS GRVYSNDNVE AVLDRYLAES SGQGNYSLIK QKEVKEDISG GFWLDQPIEN 120 MGLVELLEYA MALNDLRKNV EARVEELSIQ KSTYLWQYVA DQELNKDRDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 6e-29 | M-type_MADS family protein |