PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022726552.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 306aa MW: 33894 Da PI: 7.3127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022726552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.7	5.3e-15	227	252	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_022726552.1 227 FKTELCNKWQETGACPYGDHCQFAHG 252 79***********************8 PP
2	zf-CCCH	18.7	3.1e-06	265	289	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H XP_022726552.1 265 YKTEVCRMVLAGDVCPYGHRCHFRH 289 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MQNDNCSTVY GDLAAKQQND DQSDGVYSSS TTSSSAASAA ASLFALYHPR LLMQQHQDMI 60 NRHNLCLTRL REAAKEAEAL RQENTSLRSV NRDLNKQLSA LIQASVQNHF ASSDYNTTPF 120 DLVNALRGLC LSGGGVGEEE VSDESPTSVM EGAVDVERVM LPKSISVRSN GYLKMMNQAG 180 ASHRGKTRGP TRPGNASQLS GAQKVYVQGG KKEEEPLELE VYNQGMFKTE LCNKWQETGA 240 CPYGDHCQFA HGIEELRPVI RHPRYKTEVC RMVLAGDVCP YGHRCHFRHA LTEQEKFMGH 300 LKPSTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	3e-78	C3H family protein