PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022724799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 429aa MW: 46971.3 Da PI: 7.6712 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.6e-09 | 108 | 129 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+++ + G C+yGd+C+F H+ XP_022724799.1 108 KICNYWVQ-GNCNYGDKCRFLHS 129 79******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence |
MDLDGGNRRV FNRLGSPSAA PTDSSKHQKV CYHWRAGKCT RFPCPFLHSE LPHSSGPITA 60 NGSGAPKRFA DDSGFSGPAP RRGPNFNNNH NNSWGRMGPN KVVRKTEKIC NYWVQGNCNY 120 GDKCRFLHSW SLGESFTMLN HLDGHQKVVS GIALPAGMDK LYTGSKDETV RAWDTNSGQC 180 MGVIPLSGEV GCMISEGPWL FVGIPNIVKA WNTQTNLELS LSGPVGQVYA MVVGNDLLFA 240 GTQNGTILAW KFNAVTNNFE PAVSLKGHTL AVVSLVVGAN RLYSGSMDHS IKVWSLETLQ 300 CLQTLTEHTN VVMSLLCWEQ FLLSCSLDQT IKVWVATENG NLQVTYTHNE DPGLLNLRGM 360 HDSESKPVLL CACNDNSVRL YDLPSFSERG KIFAKEEIRA IEVGPGGLFF TGDGTGFRVW 420 KLAEPIATS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |