PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr21123.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 658aa MW: 71564 Da PI: 10.4865

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr21123.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	15	45	4	35
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgR 35 W t+E++ll+ av ++G+++W+++a +++ R Dr21123.1 15 WGTWEELLLASAVSRHGTRRWDSVAMEVQ-SR 45 ***************************99.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MARSGDPDEG EGEIWGTWEE LLLASAVSRH GTRRWDSVAM EVQSRIPTSS AHLLTPLRCX 60 QRFHLLQNRF STTAVAIADX EPDDEPLPDI PWLDELRKLR VAELRREVER SDLSIRNLQI 120 KVERLKGERE RIAGEADLKS GEGRKGSAGS TPETLAGDRI SGRSCKESNS TDPKEDGRKP 180 GEDAKNAKDT AGDGKRKTDP VAGERSDDRS SAAGDPDPAD PRESGESAAE SKGGETEERE 240 RDGDGEKESS EVQSSASLTR RRRMRRRRKG PSVSSGAADE PETDVVTPHA ASVPFTASQP 300 LVSFLEIIRS SNPGSVFARR MDSQNTAKYK SLIRRHVDLE MVTRRIERSG SAYTSSEFFR 360 DLLLLCNNAI VFFAKSSDEA IAAVHLRDLI SKEMTAAGKQ KPAQTPPPPP PLVQPPPAAT 420 APPPQPAKLK EDPDLPRSLL EKSTSAAPLI TCRKRSSISA KKADPERKEE KPEPDRKERD 480 XEDPIHKKKT KERSSFPPSS GFRTNKMRAL PKNSNPDPAS NLNAQVAETA EADSTPKVEK 540 KNTPNGGSSA SLSKKRSATS FLNRMKRSSP SNGTLLESLK SSGAASSSGG KATDQKKSGK 600 GESRKERSSK SGATTKSAPT KRSVGRPPKR GAAPPSKRAR DEAEGSKPTP PTRKRGRR

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MARSGDPDEG EGEIWGTWEE LLLASAVSRH GTRRWDSVAM EVQSRIPTSS AHLLTPLRCX  60
QRFHLLQNRF STTAVAIADX EPDDEPLPDI PWLDELRKLR VAELRREVER SDLSIRNLQI  120
KVERLKGERE RIAGEADLKS GEGRKGSAGS TPETLAGDRI SGRSCKESNS TDPKEDGRKP  180
GEDAKNAKDT AGDGKRKTDP VAGERSDDRS SAAGDPDPAD PRESGESAAE SKGGETEERE  240
RDGDGEKESS EVQSSASLTR RRRMRRRRKG PSVSSGAADE PETDVVTPHA ASVPFTASQP  300
LVSFLEIIRS SNPGSVFARR MDSQNTAKYK SLIRRHVDLE MVTRRIERSG SAYTSSEFFR  360
DLLLLCNNAI VFFAKSSDEA IAAVHLRDLI SKEMTAAGKQ KPAQTPPPPP PLVQPPPAAT  420
APPPQPAKLK EDPDLPRSLL EKSTSAAPLI TCRKRSSISA KKADPERKEE KPEPDRKERD  480
XEDPIHKKKT KERSSFPPSS GFRTNKMRAL PKNSNPDPAS NLNAQVAETA EADSTPKVEK  540
KNTPNGGSSA SLSKKRSATS FLNRMKRSSP SNGTLLESLK SSGAASSSGG KATDQKKSGK  600
GESRKERSSK SGATTKSAPT KRSVGRPPKR GAAPPSKRAR DEAEGSKPTP PTRKRGRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	267	RRRRMRRR
2	261	268	RRRRMRRR
3	262	269	RRRRMRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	6e-34	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr21123.1