PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dr20789.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 22526.3 Da PI: 7.6265 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.2 | 7.7e-22 | 34 | 83 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie ++ rq tfskRr+g +KKA+EL vLC+++v + fs+ gkly + Dr20789.1 34 KRIEKDTARQATFSKRRKGFFKKANELAVLCGVQVTALAFSPAGKLYSFT 83 79*********************************************995 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence |
MMEAKMDMKQ NQKQKQKQKQ KQKQNQGRQK VPIKRIEKDT ARQATFSKRR KGFFKKANEL 60 AVLCGVQVTA LAFSPAGKLY SFTANTSLDE LMHRCIANAG PSDLHYQQQQ QQQQQQQQQQ 120 QQEQQQQQQE QQQPWDMVGM NMDDHLGQVE MINYDDEFWN NWLNELMTDE TLNLPPLPDL 180 LLDPPTGSSS HHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14210.1 | 2e-19 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | Dr20789.1 |