PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr19009.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 494aa MW: 54804.6 Da PI: 7.1251

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr19009.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	290	335	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L Dr19009.1 290 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVTYINEL 335 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MEDLLLFPSS TNNINNNNNN SNNISIQYQL QQLLQSQSQP QPWSHAIIWS SSPDLLLLSW 60 HAGIFIPNNT NSNSTNINGS NNSTIIDINY NSSSNCSKTA GRYSNSNETM VDDAEWFYII 120 SSNRSFHCND LNTLPSRSFS TSTSIWLSGS HHLQSASSCP RAADARFHGI NTLVYIPLPI 180 FSSVLELASP VVIPRDSLXI QQAQFSIFLS TSPNTLSVIS PPHPPSQGPS PSPSPLQAQA 240 QAQQAQQVQQ ATVAIVTSLK KESSSSDHYD SDQHQPRRRK RDRQDGIPVN HVEAERQRRE 300 KLNHRFYALR SVVPNVSRMD KASLLADAVT YINELRNRVS ELEAHEQQQH QQQQQQPSTI 360 ITPMTFKKEN NNNNNNNMDQ SMSSITSSAT SACNIINGGG GVGRMDLEVR LIGQEAVIRA 420 QSCTGGHPAA RLMNAMSELE LQVSHASVTK VKELMLQDVV VTVPHGLQRE DVLTAALLSK 480 LDAHHHHHQQ QQHQ

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MEDLLLFPSS TNNINNNNNN SNNISIQYQL QQLLQSQSQP QPWSHAIIWS SSPDLLLLSW  60
HAGIFIPNNT NSNSTNINGS NNSTIIDINY NSSSNCSKTA GRYSNSNETM VDDAEWFYII  120
SSNRSFHCND LNTLPSRSFS TSTSIWLSGS HHLQSASSCP RAADARFHGI NTLVYIPLPI  180
FSSVLELASP VVIPRDSLXI QQAQFSIFLS TSPNTLSVIS PPHPPSQGPS PSPSPLQAQA  240
QAQQAQQVQQ ATVAIVTSLK KESSSSDHYD SDQHQPRRRK RDRQDGIPVN HVEAERQRRE  300
KLNHRFYALR SVVPNVSRMD KASLLADAVT YINELRNRVS ELEAHEQQQH QQQQQQPSTI  360
ITPMTFKKEN NNNNNNNMDQ SMSSITSSAT SACNIINGGG GVGRMDLEVR LIGQEAVIRA  420
QSCTGGHPAA RLMNAMSELE LQVSHASVTK VKELMLQDVV VTVPHGLQRE DVLTAALLSK  480
LDAHHHHHQQ QQHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	280	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	3e-41	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr19009.1