PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17708.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 519aa MW: 58051.1 Da PI: 6.6463

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17708.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.3e-13	252	277	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + + G+C+yG+ C+FaHg Dr17708.1 252 FKTELCNKWEELGECPYGEHCQFAHG 277 79***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MQQEMMITGS IKSEPFTSPD RRFQQYLSSG SIDLFGLYSP KNPTVTSPAS LTPSSISFDD 60 ESEDHHDAAA ITDTQLYLAR LTLQYRQLAD RYDLCLSHLQ DAADELESLR QENAELRIAK 120 NDLAKRLSEI RNGRAIVDEF RRLRLAEEGT SPTSVLGGSF SHAEKRVTLP KSISIRSSGF 180 LKLNPTGRPS GPSSSARFSQ QQQQQQQHQH QHQHQHQQHQ QHQHQHQKVY LGTGDEEKKS 240 DVEVEVYNQG MFKTELCNKW EELGECPYGE HCQFAHGISE LRPVIRHPRY KTEVCRMVLS 300 GPNAHLPSDG TVNSAFHCSP LALVSLPDKP AGIGINPLSP VSHPACPLPD QSASVGTIPP 360 SPLSHSPYPT IPPTLQPPDQ PLLLSSETLS DPDSNHSSLV NKVRLALLPP PPLKDSKMDD 420 PGGSEDGESL LGDLLSWRRT GHCSIDIEIS NIEAEISLME ARELQSMDPW LVVWLRSLRN 480 RHAALIRQIS CFWAQRAKMH WLNQGDLNTS FFQRSVKAR

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MQQEMMITGS IKSEPFTSPD RRFQQYLSSG SIDLFGLYSP KNPTVTSPAS LTPSSISFDD  60
ESEDHHDAAA ITDTQLYLAR LTLQYRQLAD RYDLCLSHLQ DAADELESLR QENAELRIAK  120
NDLAKRLSEI RNGRAIVDEF RRLRLAEEGT SPTSVLGGSF SHAEKRVTLP KSISIRSSGF  180
LKLNPTGRPS GPSSSARFSQ QQQQQQQHQH QHQHQHQQHQ QHQHQHQKVY LGTGDEEKKS  240
DVEVEVYNQG MFKTELCNKW EELGECPYGE HCQFAHGISE LRPVIRHPRY KTEVCRMVLS  300
GPNAHLPSDG TVNSAFHCSP LALVSLPDKP AGIGINPLSP VSHPACPLPD QSASVGTIPP  360
SPLSHSPYPT IPPTLQPPDQ PLLLSSETLS DPDSNHSSLV NKVRLALLPP PPLKDSKMDD  420
PGGSEDGESL LGDLLSWRRT GHCSIDIEIS NIEAEISLME ARELQSMDPW LVVWLRSLRN  480
RHAALIRQIS CFWAQRAKMH WLNQGDLNTS FFQRSVKAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-39	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr17708.1