PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17628.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 437aa MW: 48623.7 Da PI: 7.9593

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17628.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.2e-39	123	199	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e C +dl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk++ Dr17628.1 123 RCQAEXCGTDLTHAKHYHRRHKVCEFHSKASIVITAGLSQRFCQQCSRFHVLSEFDQGKRSCRKRLAEHNRRRRKSH 199 6**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MFLEYEWTNP AAAAAAAMLL FSEENQQVIN DHRQVYNHHF GHDLTGDFFC QPTTIPAPPP 60 APALPTSGLF PMVTSSSSSL HGLALPPAPT RLGLNLGVRT YFSSEEGMMV TGRVSRRRPR 120 MVRCQAEXCG TDLTHAKHYH RRHKVCEFHS KASIVITAGL SQRFCQQCSR FHVLSEFDQG 180 KRSCRKRLAE HNRRRRKSHD LITSPAGEKT PVMVTEKVLF TTSDNKTNDH VLSLPPPPPP 240 PLPPQEETNG APMVLGLGFN SNESGDLMVV PAPAGLSGSS STGTSPCRFP VQLGDFVLVL 300 IPHECLPKIS KYXSILLLDP CSCSYRKGTQ KIDQAFASGL VLLEFRSLES DPKCWSAEMV 360 PGNGFVHVVE VDKRELWRLL CLCFASXCGR RTIAEQGELH GSLLSAPEER RLTETRDRTS 420 KSKEKTWMTE EREHDPE

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MFLEYEWTNP AAAAAAAMLL FSEENQQVIN DHRQVYNHHF GHDLTGDFFC QPTTIPAPPP  60
APALPTSGLF PMVTSSSSSL HGLALPPAPT RLGLNLGVRT YFSSEEGMMV TGRVSRRRPR  120
MVRCQAEXCG TDLTHAKHYH RRHKVCEFHS KASIVITAGL SQRFCQQCSR FHVLSEFDQG  180
KRSCRKRLAE HNRRRRKSHD LITSPAGEKT PVMVTEKVLF TTSDNKTNDH VLSLPPPPPP  240
PLPPQEETNG APMVLGLGFN SNESGDLMVV PAPAGLSGSS STGTSPCRFP VQLGDFVLVL  300
IPHECLPKIS KYXSILLLDP CSCSYRKGTQ KIDQAFASGL VLLEFRSLES DPKCWSAEMV  360
PGNGFVHVVE VDKRELWRLL CLCFASXCGR RTIAEQGELH GSLLSAPEER RLTETRDRTS  420
KSKEKTWMTE EREHDPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-45	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr17628.1