PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17579.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 405aa    MW: 45607.7 Da    PI: 5.1355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17579.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.53.7e-95324032374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL ecA+a+s++d  +++++L+ l+elasp+gd  q+la yf++A   + ++s++++yk+l + ++++++ +++ ++   f+evsP+ +f+h++ N a
  Dr17579.1  32 EKLLKECAKAISEKDSGKIHHFLWMLNELASPYGDCDQKLAYYFLQAFFCKATESGERCYKTLISVAEKSHSFESARKVILKFQEVSPWTTFGHVASNGA 131
                68999**********************************************************8888875555555555555****************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgE 200
                Ilea++ge ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+  + +    ++e+g+r++kfA+ +gvpfefnv+   +rl +l+ e++ v+ +E
  Dr17579.1 132 ILEAMDGEAKLHIIDISSTYCTQWPTLLEALATRNDDTPHLRLTVVVT-AGTGGSVMKEIGQRMEKFARLMGVPFEFNVVsGFSRLGELKEEDFGVRDDE 230
                ************************************************.445899************************85567**************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                a+aVn++ +l ++         er+ +++++ +l+Pkvv+vve+ead   n  +F++   e+l++ys +f++le+++ ++s+er ++Ere  +r+i +v+
  Dr17579.1 231 AVAVNCIGALRKVS------VIERSPFIRMLHHLRPKVVTVVEEEADFtsNLDEFMACSEECLRFYSIFFEMLEESFVPTSNERLMLERE-SSRSILSVL 323
                ************97......334789*******************99855777*************************************.9******** PP

       GRAS 299 acegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSaWr 374
                aceg+     er+e+ ++W erl+   F+p++++++ ++++k+llr++   g+ +      +   l+l+Wkd+p+v++SaW+
  Dr17579.1 324 ACEGEGggECERREKGSQWCERLT-GDFSPMSFNDDGVDDVKALLRRYR-AGWALLpaqgTDATGLYLTWKDEPVVWASAWK 403
                ***9976689************96.68**********************.66666544556788899**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MQNPNHHHQQ HQITTSQTLE SIDPSASGKW AEKLLKECAK AISEKDSGKI HHFLWMLNEL  60
ASPYGDCDQK LAYYFLQAFF CKATESGERC YKTLISVAEK SHSFESARKV ILKFQEVSPW  120
TTFGHVASNG AILEAMDGEA KLHIIDISST YCTQWPTLLE ALATRNDDTP HLRLTVVVTA  180
GTGGSVMKEI GQRMEKFARL MGVPFEFNVV SGFSRLGELK EEDFGVRDDE AVAVNCIGAL  240
RKVSVIERSP FIRMLHHLRP KVVTVVEEEA DFTSNLDEFM ACSEECLRFY SIFFEMLEES  300
FVPTSNERLM LERESSRSIL SVLACEGEGG GECERREKGS QWCERLTGDF SPMSFNDDGV  360
DDVKALLRRY RAGWALLPAQ GTDATGLYLT WKDEPVVWAS AWKPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-141GRAS family protein