PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17106.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 700aa MW: 75726 Da PI: 6.8483

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17106.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.1e-21	111	166	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L+ rqVk+WFqNrR+++k Dr17106.1 111 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSRRLCLESRQVKFWFQNRRTQMK 166 688999***********************************************999 PP
2	START	134.7	1e-42	285	436	61	205
HHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS START 61 lveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149 +v ++l + +W +++ +a+ ++vis+g galqlm+aelq lsplvp R++ f+R+++q+ +g w++vdvS+d ++++ ++ + R +lp Dr17106.1 285 VVPDFLPVT-RWADMFPcvvaRATATDVISTGmagtrnGALQLMNAELQILSPLVPiREVNFLRFCKQHAEGIWAVVDVSIDAISENS-TPTSCR--RLP 380 677777788.9**999999**************************************************************9.787777..9 PP EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 Sg+l+++++ng+skvtwveh++++++ +h l+r+l++sg a g +w+atlqrq e Dr17106.1 381 SGCLVQDMPNGYSKVTWVEHAEYDDSAVHHLYRPLLRSGSALGSPRWLATLQRQSE 436 *****************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MSFGGVFERG TGARVVSEIP FSSLGMPGGP ISQTRLVSGL SLGLQPDGRS EMNRMTAIGG 60 AXAXGGGVGS DSVNKNNNNN NKDDENESRS GSDNLEGGSG DDLEHENPRK KKRYHRHTPQ 120 QIQELEALFK ECPHPDEKQR MELSRRLCLE SRQVKFWFQN RRTQMKTQIE RHENSILRQE 180 NDKLRAENMS IRDAMRNPIC NSCGGPAMLG EVSLEEQHLR IENARLKDEL DRVCALAGKF 240 LGRPMPSLQP NHHTNTPTNI NASLELGVGS NGFNGLSSVA PTLPVVPDFL PVTRWADMFP 300 CVVARATATD VISTGMAGTR NGALQLMNAE LQILSPLVPI REVNFLRFCK QHAEGIWAVV 360 DVSIDAISEN STPTSCRRLP SGCLVQDMPN GYSKVTWVEH AEYDDSAVHH LYRPLLRSGS 420 ALGSPRWLAT LQRQSECLAI LLSSSVPGRD HTAITASGRR SMLKLAQRMT GSFCTGVCAS 480 TAHKWSKLCA PGIGEDVRVM TRQSVDDPGE PPGVVLSAAT SVWLPVSPQR VFDFLRDERL 540 RSEWDILSNG GPMQEMAHIA KGQDHGNAVS LLRASAGNXN QSSMLILQET CTDASGALVV 600 YAPVDIPAMH VVMNGGDSAY VALLPSGFAI VPDGQGNVSN AATASGSPRI VDGGSLLTVA 660 FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MSFGGVFERG TGARVVSEIP FSSLGMPGGP ISQTRLVSGL SLGLQPDGRS EMNRMTAIGG  60
AXAXGGGVGS DSVNKNNNNN NKDDENESRS GSDNLEGGSG DDLEHENPRK KKRYHRHTPQ  120
QIQELEALFK ECPHPDEKQR MELSRRLCLE SRQVKFWFQN RRTQMKTQIE RHENSILRQE  180
NDKLRAENMS IRDAMRNPIC NSCGGPAMLG EVSLEEQHLR IENARLKDEL DRVCALAGKF  240
LGRPMPSLQP NHHTNTPTNI NASLELGVGS NGFNGLSSVA PTLPVVPDFL PVTRWADMFP  300
CVVARATATD VISTGMAGTR NGALQLMNAE LQILSPLVPI REVNFLRFCK QHAEGIWAVV  360
DVSIDAISEN STPTSCRRLP SGCLVQDMPN GYSKVTWVEH AEYDDSAVHH LYRPLLRSGS  420
ALGSPRWLAT LQRQSECLAI LLSSSVPGRD HTAITASGRR SMLKLAQRMT GSFCTGVCAS  480
TAHKWSKLCA PGIGEDVRVM TRQSVDDPGE PPGVVLSAAT SVWLPVSPQR VFDFLRDERL  540
RSEWDILSNG GPMQEMAHIA KGQDHGNAVS LLRASAGNXN QSSMLILQET CTDASGALVV  600
YAPVDIPAMH VVMNGGDSAY VALLPSGFAI VPDGQGNVSN AATASGSPRI VDGGSLLTVA  660
FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52170.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr17106.1