PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16883.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

E2F/DP

Protein Properties

Length: 381aa MW: 42635.5 Da PI: 9.0195

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16883.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	59.4	5.7e-19	19	74	11	71
E2F_TDP 11 qkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 q+f+kl+ ++ ++v l+++a++L v +rRRiYDi+NVLe++++++k kn+++w+g Dr16883.1 19 QNFVKLYDREGVDTVGLDDAARQL---GV--ERRRIYDIVNVLESVGILAKVGKNRYSWIG 74 89*****999********.....****************************98 PP
2	E2F_TDP	37.4	4.2e-12	213	253	35	71
E2F_TDP 35 vsedvknkrRRiYDilNVLealnliek.....kekneirwkg 71 +s++ k+RR+YDi+NVL+++nliek ++k+++rw g Dr16883.1 213 ISNNA-AKVRRLYDIANVLSSVNLIEKtqqpeNKKPAFRWLG 253 55555.799****************999999999**87 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MCSIFDPSAV RHQSYDRKQN FVKLYDREGV DTVGLDDAAR QLGVERRRIY DIVNVLESVG 60 ILAKVGKNRY SWIGFSGIPD TLHELKEEAL REMPGSAVDL ASLEPEGLDD VGDQNPKSSQ 120 KFLGSKSLES LEEKKASLTP SCCTTSSSIT SKSDPSVIVS QILLAYCFGW GCQSMDGIVG 180 RILCMRLVVL TNDNKKEKSL GQLTQNFVKL FLISNNAAKV RRLYDIANVL SSVNLIEKTQ 240 QPENKKPAFR WLGYPKTDNK VEVATPEAKT KSKRVFGTDI TTKADFSRNK TLSMEEKKHG 300 GPQMTEKDPK DCNPVKRRKL QSMKDYDFGP FSPVKVAKES SHTQNKNEGA ENLENLTSCL 360 RPQYKNPGVR NDSFLNCARY D

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MCSIFDPSAV RHQSYDRKQN FVKLYDREGV DTVGLDDAAR QLGVERRRIY DIVNVLESVG  60
ILAKVGKNRY SWIGFSGIPD TLHELKEEAL REMPGSAVDL ASLEPEGLDD VGDQNPKSSQ  120
KFLGSKSLES LEEKKASLTP SCCTTSSSIT SKSDPSVIVS QILLAYCFGW GCQSMDGIVG  180
RILCMRLVVL TNDNKKEKSL GQLTQNFVKL FLISNNAAKV RRLYDIANVL SSVNLIEKTQ  240
QPENKKPAFR WLGYPKTDNK VEVATPEAKT KSKRVFGTDI TTKADFSRNK TLSMEEKKHG  300
GPQMTEKDPK DCNPVKRRKL QSMKDYDFGP FSPVKVAKES SHTQNKNEGA ENLENLTSCL  360
RPQYKNPGVR NDSFLNCARY D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14960.1	2e-44	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	Dr16883.1