PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16547.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 313aa MW: 36128.2 Da PI: 9.6225

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16547.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.2e-16	56	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed+ll+ +++ G g+W++I+++ g+ R++k+c++rw +yl Dr16547.1 56 RGQWTANEDQLLIXYIQCNGEGNWNSIPQKAGLLRCPKSCRLRWMNYL 103 89****************************99**********97 PP
2	Myb_DNA-binding	49.6	9.2e-16	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++E++l+++++++lG++ W++Iar+++ gRt++++k++w+ + Dr16547.1 109 RGNIGPQEEDLIIRLHALLGNR-WSLIARRLP-GRTDNEIKNYWNCH 153 677789**************.*****.*********977 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MATTITLXAV TVACKVLGLG LMXVTMMYYS NNTHKITRYI FPMGRSPCYA KAGLQRGQWT 60 ANEDQLLIXY IQCNGEGNWN SIPQKAGLLR CPKSCRLRWM NYLRPDIKRG NIGPQEEDLI 120 IRLHALLGNR WSLIARRLPG RTDNEIKNYW NCHLKKKLKE QGFAINESRL SKRRNAIKYS 180 NKNSKSRNNK IDLKKKKDGV TCIEHETGTK IYIPKPTRFT SIMKSSDNYP GNRKNDDMNE 240 GRLILEQGNY XSDNSNNTIM QHLNTLGFLE DDLLLDDEFA INDFSSLEKL FQEYLQALNS 300 NEDQVHDTQH QSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	1e-58	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr16547.1