PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16407.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 190aa MW: 21851.8 Da PI: 8.0891

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16407.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.5e-15	52	97	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ ++ ++++lG++ W++Ia++++ gRt++++k+ w+++l Dr16407.1 52 RGNFSREEEDYIITLHQLLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 97 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MRTGELFPNK QFPFVSVHNL FNINIYIFLG LLRCGKSCRL RWTNYLRPDI KRGNFSREEE 60 DYIITLHQLL GNRWSAIAAK LPGRTDNEIK NVWHTHLKKR VKQGEKPMKL LPNSSMSDTD 120 GSSSSCTEFS AIVNRDPAES LEFEKSLRSD ALSFESRNIS HVDAVSNGDE ISFWLKIFME 180 SGNIQELPEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	5e-45	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr16407.1