PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr15930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 26931.2 Da PI: 9.1953 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 9.6e-24 | 16 | 60 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien+ rqv fskRr+g++KKA+ELS+LC+aeva+i+fs+ gk Dr15930.1 16 KKIENEESRQVCFSKRRAGLFKKANELSILCGAEVALIVFSPAGK 60 68*****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MAKKKTSMGR QRIEIKKIEN EESRQVCFSK RRAGLFKKAN ELSILCGAEV ALIVFSPAGK 60 PFSFGHPHVD SISNRFLANS MATSNYVEPR HGXIMRELNR KTTELVGLSE AAKKKKAMLE 120 EETIKRNNGD EPQRLLWGAN AEELDLEELV HLRSSLEELK MSVGRRAERI NSETAVAARN 180 LFSMCNGINN GFAVASGGGG GGFVHGGGVF GINHGDEEAA AYSFIPAAAA AASSAHHHHG 240 FGYGHGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-31 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr15930.1 |