PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr15657.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 570aa    MW: 64485.3 Da    PI: 4.9736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr15657.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.61.1e-861945652374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppse.tsekn.sseelaalkl...fsevsPilkfshl 96 
                 +lLl++Ae vs+++  +a++lL + ++ +s  g p+qRl+ yf  AL++r+ r++ +l+++ p  +  + ++  +e l+++ +    +++ P+ ++ ++
  Dr15657.1 194 ASLLLAAAEKVSNRQYDRASNLLRQCETFSSHCGHPVQRLVYYFSDALQERIDRETRRLSAKRPRDKgLPAEDvAKEMLTSHPIhliAQKTLPFSQVIQF 293
                689***************************************************999998777544413333334444444443556899********** PP

       GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                t  q+Il+ v++ +r+H + ++i++G+Q   L+qaLa+R++ p   lRiTgvg+    s+e +  tg+rL +fAe+l +pf+f+v+++++++dl+ ++++
  Dr15657.1 294 TSIQTILDNVATMKRIHLVNLSIKHGFQCTILMQALATRSSCPVdYLRITGVGA----SEEPVLLTGQRLVSFAETLSLPFDFRVVAVSDMKDLREDMFE 389
                ****************************************766559********....9***************************************** PP

       GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                ++p+EalaV ++l + ++  ++ sle+    +++++++l+P ++ +v+ ea+hns+sF +rf+eal +ysa fd ++  l r +++r+++E  ++++  +
  Dr15657.1 390 IEPDEALAVYSSLDMNSMIVRPNSLEN----LIRVMRKLKPIIMMIVDLEANHNSPSFITRFTEALFFYSAYFDYVNCYLDRSDSNRTFLEGYFFAEGMR 485
                *******************99999999....********************************************************************* PP

       GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++a+eg+er  rh + + Wr  + ++G+ +v l+e a  qa+lll+k++ s   +++++ +sl+ gWk+ pL+++SaW+
  Dr15657.1 486 SIIATEGSERLIRHVSISIWRVYFARFGLVEVDLNEWASYQASLLLKKFAhSSSCTLDKNGKSLTVGWKGTPLYFISAWK 565
                **************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    
MFSIEGFNPN GAQEGFEDEC SVKQTQFFTT EDVGNIVDDF WSIYSFSQES QTDKGTILPS  60
SVTESIPEFI APQTPLMVFE PNLENPIVQD ITEFVLPKKK SCTGVLSSLE ILNSYKPCHN  120
RLQVGNLNGE IVGFDSNSLD GETRFSTEEI VRFAAARYIE LSSPTEGNNS MLRNPLGLSL  180
SGFNNEEIQN VELASLLLAA AEKVSNRQYD RASNLLRQCE TFSSHCGHPV QRLVYYFSDA  240
LQERIDRETR RLSAKRPRDK GLPAEDVAKE MLTSHPIHLI AQKTLPFSQV IQFTSIQTIL  300
DNVATMKRIH LVNLSIKHGF QCTILMQALA TRSSCPVDYL RITGVGASEE PVLLTGQRLV  360
SFAETLSLPF DFRVVAVSDM KDLREDMFEI EPDEALAVYS SLDMNSMIVR PNSLENLIRV  420
MRKLKPIIMM IVDLEANHNS PSFITRFTEA LFFYSAYFDY VNCYLDRSDS NRTFLEGYFF  480
AEGMRSIIAT EGSERLIRHV SISIWRVYFA RFGLVEVDLN EWASYQASLL LKKFAHSSSC  540
TLDKNGKSLT VGWKGTPLYF ISAWKFQYGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-55GRAS family protein