PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14009.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 1149aa MW: 129375 Da PI: 7.1243

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14009.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.8e-08	485	504	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++fa G+C++G+ CkF+H Dr14009.1 485 PCKYFAV-GHCRRGEDCKFSH 504 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1149 aa Download sequence
MAEYHVDADK QESLLPLAED AFHPENDPQM DFSSYYRQTK FSKMKAVNED GPKSLKRAST 60 SENIALEEET HTNRKTDKWS SPDGQFTELA GSISPDPHAR RNRSTSVSPK RCWSISNRSL 120 SRSPSRVSTF GSKRWENRGR TREGLIIHDR DFPDCKGGSK RANWDGMTAV QTTRRSGITN 180 KEIKGLVPAL DQSDDLGRSI SPGLESWRRH TYNINPKHGC SRSERNFISN KDGAKMSNWE 240 TASGDQTTNE DGYSRRHGGV WGAALDRFEE LDQSISVDHQ RWRRRSHSIS PKHSWRIRKR 300 SRSPSPPLGL KSEMESWNTR GRTSTGGSAA AYRDFATEKL AKGSHLRELG EDDARRHSDN 360 ASREFGEGRF ERGRYLRYHS RENFDDLLEQ KDFSRDRLLQ REPSHHDGNR EKHEHHQNNR 420 STDHHYISTK ERRLRVSTCN YDHYDVNSHS QWSMRDGARE RNYDRRDADS PFRQRLKSRR 480 VSDTPCKYFA VGHCRRGEDC KFSHQPSHGH PKGRQQDDKQ DYNMRTETAP SLSGSERNNK 540 LSTMDVHISS HGMHNGNDSR MSNSSSMDDE LLRKSDAQFK ASQSPEQDIT HDTFERYDSA 600 IHADMMSKNT HMEQIISNKE QTSSKGGYVV GDIARSKTEM DFVTTPFPAV SFTEKCLSRS 660 RSEQQLDPXL XSFASNAQDM KGDILSPSGK TVQETVCSIV PNGDFQLGIG QSLSPTNQQM 720 HFASQVGHSE QIHLSPVSLR QHAPEGQCDQ QMDSAAQVGY SELIQQSPVS HENGLSQHVP 780 KGQCNQQIQQ SPVSDKNGPS QSIANPVVPQ GQSNQIFSRD HLNIQPILIS DDESDQQAGD 840 SNEITSQVTS GTSASQVVVI TDEVAHVTNL LLSPSQVCQQ PSQPDAILTP IGSAGSTLSQ 900 IASKPSMVKL PSPPLVSSLD GSQGFVAPHH NQTPASNSYE DAHLDDNENR QNKILELHHN 960 QTQVSDNCYK GAHSDENENR QNGKLELKQV EHVEEVTVSI KSSHSDENEN GQNGKSELKQ 1020 VEEVTVSIKS QNEXVHVPPT EEVDHDAQID GENKNTKEIN GMKMFKFALV EFVKDQLKPT 1080 WKEGHLSREA HKAIVKKVVD KVTDSVKGPN FPQTQHKINQ YMEHSKSKLT KLVQLCAVVV 1140 TYACTSNWF

Sequence ? help Back to Top

Protein Sequence Length: 1149 aa Download sequence

MAEYHVDADK QESLLPLAED AFHPENDPQM DFSSYYRQTK FSKMKAVNED GPKSLKRAST  60
SENIALEEET HTNRKTDKWS SPDGQFTELA GSISPDPHAR RNRSTSVSPK RCWSISNRSL  120
SRSPSRVSTF GSKRWENRGR TREGLIIHDR DFPDCKGGSK RANWDGMTAV QTTRRSGITN  180
KEIKGLVPAL DQSDDLGRSI SPGLESWRRH TYNINPKHGC SRSERNFISN KDGAKMSNWE  240
TASGDQTTNE DGYSRRHGGV WGAALDRFEE LDQSISVDHQ RWRRRSHSIS PKHSWRIRKR  300
SRSPSPPLGL KSEMESWNTR GRTSTGGSAA AYRDFATEKL AKGSHLRELG EDDARRHSDN  360
ASREFGEGRF ERGRYLRYHS RENFDDLLEQ KDFSRDRLLQ REPSHHDGNR EKHEHHQNNR  420
STDHHYISTK ERRLRVSTCN YDHYDVNSHS QWSMRDGARE RNYDRRDADS PFRQRLKSRR  480
VSDTPCKYFA VGHCRRGEDC KFSHQPSHGH PKGRQQDDKQ DYNMRTETAP SLSGSERNNK  540
LSTMDVHISS HGMHNGNDSR MSNSSSMDDE LLRKSDAQFK ASQSPEQDIT HDTFERYDSA  600
IHADMMSKNT HMEQIISNKE QTSSKGGYVV GDIARSKTEM DFVTTPFPAV SFTEKCLSRS  660
RSEQQLDPXL XSFASNAQDM KGDILSPSGK TVQETVCSIV PNGDFQLGIG QSLSPTNQQM  720
HFASQVGHSE QIHLSPVSLR QHAPEGQCDQ QMDSAAQVGY SELIQQSPVS HENGLSQHVP  780
KGQCNQQIQQ SPVSDKNGPS QSIANPVVPQ GQSNQIFSRD HLNIQPILIS DDESDQQAGD  840
SNEITSQVTS GTSASQVVVI TDEVAHVTNL LLSPSQVCQQ PSQPDAILTP IGSAGSTLSQ  900
IASKPSMVKL PSPPLVSSLD GSQGFVAPHH NQTPASNSYE DAHLDDNENR QNKILELHHN  960
QTQVSDNCYK GAHSDENENR QNGKLELKQV EHVEEVTVSI KSSHSDENEN GQNGKSELKQ  1020
VEEVTVSIKS QNEXVHVPPT EEVDHDAQID GENKNTKEIN GMKMFKFALV EFVKDQLKPT  1080
WKEGHLSREA HKAIVKKVVD KVTDSVKGPN FPQTQHKINQ YMEHSKSKLT KLVQLCAVVV  1140
TYACTSNWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-08	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr14009.1