PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13069.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 724aa MW: 79756.3 Da PI: 8.4799

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13069.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	624	673	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Dr13069.1 624 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 673 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MVFHKRLEYG STGCQVPVMI RVPKSARGKR SVRKKVEDQM CAFDLLATVA GELLSEKQNL 60 STPNKLVETS LPGAPKGIAK EERNTEKKIK SEPYDQGSCN ESTLVSEDSV ELQISYQFAE 120 QTHSPKATFS GPASMCLKSH EFDKDGCSGQ SSIDGNNSRN RPPELIPWKC STEEQSLGHS 180 ESCEVDGEHV IKTVSXMDRQ KTGDPTECNV XRACPMGDPM EMDVKPTAIV SSDSSVEVPL 240 SCNYVARDGT FSKSRVGVEH VDRDEEDNSS GCTHPSVMAS KAARVQRIGD GRVRKLLAMK 300 YWKVASAASK DGEFCNTNAE MKPFFRSRKL CYTRQRSQRT SFKRRKMHNC YPISASGGRI 360 KEDSVSVSLG NHGLKREVSN SSATLHGGDK PSCQKGDFRV QLSIKSFKVP ELFVEIPETA 420 TVGSLKFVAS NSESVFFNLN DIDFLFFPND KICIVIQRTV MEAVTAILGG GLRVGVLLQG 480 KKVRDDSKTL LQAGISHDDK IDNLGFMLEP NPTQAPPPVE SQEHPHLLLP CDVVEPLNRI 540 PPSAAVTSNL GPFGASPGPP LTSTVNCLES DHDSVHSPAT ALLQEKTTAN SRALVAVPAM 600 DVEALAIVPL RKSKRSELVQ RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KLRAFDNAKH 660 RTYVDLKDKW KTLVHTAKIS PQQRRGEPVP QELLDRVLAA NTYWSQQQAK LQVKPPPTEA 720 CLLL

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MVFHKRLEYG STGCQVPVMI RVPKSARGKR SVRKKVEDQM CAFDLLATVA GELLSEKQNL  60
STPNKLVETS LPGAPKGIAK EERNTEKKIK SEPYDQGSCN ESTLVSEDSV ELQISYQFAE  120
QTHSPKATFS GPASMCLKSH EFDKDGCSGQ SSIDGNNSRN RPPELIPWKC STEEQSLGHS  180
ESCEVDGEHV IKTVSXMDRQ KTGDPTECNV XRACPMGDPM EMDVKPTAIV SSDSSVEVPL  240
SCNYVARDGT FSKSRVGVEH VDRDEEDNSS GCTHPSVMAS KAARVQRIGD GRVRKLLAMK  300
YWKVASAASK DGEFCNTNAE MKPFFRSRKL CYTRQRSQRT SFKRRKMHNC YPISASGGRI  360
KEDSVSVSLG NHGLKREVSN SSATLHGGDK PSCQKGDFRV QLSIKSFKVP ELFVEIPETA  420
TVGSLKFVAS NSESVFFNLN DIDFLFFPND KICIVIQRTV MEAVTAILGG GLRVGVLLQG  480
KKVRDDSKTL LQAGISHDDK IDNLGFMLEP NPTQAPPPVE SQEHPHLLLP CDVVEPLNRI  540
PPSAAVTSNL GPFGASPGPP LTSTVNCLES DHDSVHSPAT ALLQEKTTAN SRALVAVPAM  600
DVEALAIVPL RKSKRSELVQ RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KLRAFDNAKH  660
RTYVDLKDKW KTLVHTAKIS PQQRRGEPVP QELLDRVLAA NTYWSQQQAK LQVKPPPTEA  720
CLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-107	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr13069.1