PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12833.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 652aa MW: 69466.5 Da PI: 7.2555

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12833.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.8e-08	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Dr12833.1 266 PCPEFRK-GSCRNGDACEYAHG 286 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MCTGPTKPSP PPSPPSGPLS MAVDVVKDRF APLLLELAAF DDLLGFRKLV EDEGAAIDVA 60 APWYGRSFGC SRRMRLDLRS PLQIAALYGS TSVLEYILTF FPAAIDVNRP FGSDSATALH 120 LAAGGGSASS VDAVRLLLAA AADVEVVDGG GNRAAELIPR HLHASVSMVK SLETLLKASC 180 PCPRVSSPSK EVEAKMGGEK KEYPLDLTLP DIKNGIYGTD EFRMYSFKIK PCSRAYSHDW 240 TECPFVHPGE NARRRDPRKY LYSCVPCPEF RKGSCRNGDA CEYAHGVFEC WLHPAQYRTR 300 LCKDETGCNR RVCFFAHKTE ELRSVNPSTV SASGLVVSSP RSATSSLGVS SLDMATAMML 360 MQPSSPSTSS ALAASAWLNQ SGGGAVTPTL QLPSSRLKST LSARDIQLDL DLLALDGYQH 420 KVMDELSVAS PRTSWSTNTL AASRPSDYSD LYGSLDPSLL TQLQGLSMKQ ASGTQFQSPY 480 SGKLPSSPSV RGSPSISGLD HSLATAIMNS RASAFAKRSQ SFIDRGAVAR QSTLAPTSTA 540 VAPAMGFSDW GSPSGKLDWG VHGEELNKLR KSASFGIRSN GSSFAGLASG APAAQGFDEP 600 DLSWVQSLVK DGPSAPGSLS LEQQQKLYGL NGGGEFHASE MLPAWAEEPM VA

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MCTGPTKPSP PPSPPSGPLS MAVDVVKDRF APLLLELAAF DDLLGFRKLV EDEGAAIDVA  60
APWYGRSFGC SRRMRLDLRS PLQIAALYGS TSVLEYILTF FPAAIDVNRP FGSDSATALH  120
LAAGGGSASS VDAVRLLLAA AADVEVVDGG GNRAAELIPR HLHASVSMVK SLETLLKASC  180
PCPRVSSPSK EVEAKMGGEK KEYPLDLTLP DIKNGIYGTD EFRMYSFKIK PCSRAYSHDW  240
TECPFVHPGE NARRRDPRKY LYSCVPCPEF RKGSCRNGDA CEYAHGVFEC WLHPAQYRTR  300
LCKDETGCNR RVCFFAHKTE ELRSVNPSTV SASGLVVSSP RSATSSLGVS SLDMATAMML  360
MQPSSPSTSS ALAASAWLNQ SGGGAVTPTL QLPSSRLKST LSARDIQLDL DLLALDGYQH  420
KVMDELSVAS PRTSWSTNTL AASRPSDYSD LYGSLDPSLL TQLQGLSMKQ ASGTQFQSPY  480
SGKLPSSPSV RGSPSISGLD HSLATAIMNS RASAFAKRSQ SFIDRGAVAR QSTLAPTSTA  540
VAPAMGFSDW GSPSGKLDWG VHGEELNKLR KSASFGIRSN GSSFAGLASG APAAQGFDEP  600
DLSWVQSLVK DGPSAPGSLS LEQQQKLYGL NGGGEFHASE MLPAWAEEPM VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-137	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr12833.1